Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AABM52_RS23315 Genome accession   NZ_CP150919
Coordinates   5225494..5226129 (-) Length   211 a.a.
NCBI ID   WP_167368554.1    Uniprot ID   -
Organism   Pseudomonas grandcourensis strain DGS24     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5220494..5231129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABM52_RS23280 - 5220898..5221368 (-) 471 WP_347908269.1 (2Fe-2S)-binding protein -
  AABM52_RS23285 murB 5221609..5222628 (-) 1020 WP_347908271.1 UDP-N-acetylmuramate dehydrogenase -
  AABM52_RS23290 - 5222625..5223089 (-) 465 WP_347908273.1 low molecular weight protein-tyrosine-phosphatase -
  AABM52_RS23295 kdsB 5223089..5223853 (-) 765 WP_347908274.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AABM52_RS23300 - 5223850..5224035 (-) 186 WP_003179363.1 Trm112 family protein -
  AABM52_RS23305 lpxK 5224059..5225069 (-) 1011 WP_347908275.1 tetraacyldisaccharide 4'-kinase -
  AABM52_RS23310 - 5225069..5225497 (-) 429 WP_347908276.1 biopolymer transporter ExbD -
  AABM52_RS23315 exbB 5225494..5226129 (-) 636 WP_167368554.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AABM52_RS23320 comA 5226228..5228462 (-) 2235 WP_347908277.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AABM52_RS23325 - 5228597..5229112 (+) 516 WP_347908278.1 DUF2062 domain-containing protein -
  AABM52_RS23330 - 5229191..5229970 (-) 780 WP_046037490.1 ABC transporter permease -
  AABM52_RS23335 - 5229967..5230899 (-) 933 WP_347908280.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22999.15 Da        Isoelectric Point: 6.8771

>NTDB_id=973807 AABM52_RS23315 WP_167368554.1 5225494..5226129(-) (exbB) [Pseudomonas grandcourensis strain DGS24]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGTGMTTNAAVLAGGISKALITTA
SGLIVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=973807 AABM52_RS23315 WP_167368554.1 5225494..5226129(-) (exbB) [Pseudomonas grandcourensis strain DGS24]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTTTGAGTTCCATCGCGGCCATGGCGATCGTTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCACTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AACAGCTCAACAAGGAAAAACTCAAGGAACTGCGCGCCAACTCCCCGTTGGGCGAGATCCTGGCGGCCGGCCTGGCCAAC
TCCAGGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCTGCTGCCCGGGTGATCCACGAGTTGGAGCGCTACAT
CAACGCGCTGGGCACCATCGCCGCCATGGCGCCGTTGCTGGGTCTGCTTGGTACCGTGTTGGGCATGATCGATATCTTCA
GTTCGTTCATGGGCACCGGCATGACGACCAACGCCGCAGTGCTGGCCGGCGGTATTTCCAAAGCCTTGATTACCACGGCT
TCGGGTCTGATCGTCGGTATCCCGTCGGTGTTCTTCCACCGTTTTCTGCAACGGCGCATTGATGAGCTCGTCGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTTGAAGTGGTGCAGGGCGACCGTGACGTTGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.412

100

0.834

Multiple sequence alignment