Detailed information NTG0973747

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AABM55_RS03770
• Genome accession: NZ_CP150917
• Coordinates: 855414..856286 (-)
• Length: 290 a.a.
• NCBI ID: WP_347928863.1
• Uniprot ID: -
• Organism: Pseudomonas helvetica strain DGS28
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 850414..861286

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABM55_RS03735	-	851287..852177 (+)	891	WP_347928859.1	methyl-accepting chemotaxis protein	-
AABM55_RS03740	-	852198..852437 (-)	240	WP_347928860.1	DUF2790 domain-containing protein	-
AABM55_RS03745	-	852559..853491 (+)	933	WP_347928861.1	LysR family transcriptional regulator	-
AABM55_RS03750	-	853622..854308 (+)	687	WP_347928862.1	energy-coupling factor ABC transporter permease	-
AABM55_RS03755	-	854372..854587 (+)	216	WP_054595542.1	hypothetical protein	-
AABM55_RS03760	yacG	854597..854797 (-)	201	WP_054595543.1	DNA gyrase inhibitor YacG	-
AABM55_RS03765	coaE	854794..855417 (-)	624	WP_054595544.1	dephospho-CoA kinase	-
AABM55_RS03770	pilD	855414..856286 (-)	873	WP_347928863.1	A24 family peptidase	Machinery gene
AABM55_RS03775	pilC	856289..857506 (-)	1218	WP_054595546.1	type II secretion system F family protein	Machinery gene
AABM55_RS03780	pilB	857510..859210 (-)	1701	WP_347928864.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AABM55_RS03785	-	859437..859847 (+)	411	WP_054595548.1	pilin	-
AABM55_RS03790	-	860125..860481 (+)	357	WP_347928865.1	BON domain-containing protein	-
AABM55_RS03795	-	860593..860892 (-)	300	WP_054595550.1	DUF2845 domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31850.95 Da
• Isoelectric Point: 7.6628

>NTDB_id=973747 AABM55_RS03770 WP_347928863.1 855414..856286(-) (pilD) [Pseudomonas helvetica strain DGS28]
MPLSEFMAGYPLAFVVTALVLGLVIGSFLNVVVWRLPKMLEGDWRQQALDVLGLPPEAPGPTYNLMLPHSHCPQCAHRIR
VWENIPLLSYLALRGRCSNCKAPISARYPLTELACGVLSAFVAWHFGFGWTAAWGLVLSWGLLAMCLIDADHQLLPDVLV
LPLLWLGLIVNSFELFVPLQAAMWGAVAGYLLLWSVYWLFKLITGKEGIGHGDFKLLALLGAWGGWQILPLTVLLSSLVG
AVGGVILLRLKDTNTSTPIPFGPYLAIAGWIALLWGGQITGFYWQFVGFK

Nucleotide

• Length: 873 bp

>NTDB_id=973747 AABM55_RS03770 WP_347928863.1 855414..856286(-) (pilD) [Pseudomonas helvetica strain DGS28]
ATGCCCTTGAGTGAATTCATGGCCGGTTACCCACTGGCATTCGTTGTCACTGCGCTAGTGCTTGGGCTGGTGATCGGTAG
TTTTCTCAACGTGGTGGTCTGGCGCCTGCCGAAAATGCTTGAGGGCGACTGGCGGCAACAAGCCCTGGATGTACTGGGTT
TACCCCCTGAAGCACCGGGCCCGACCTACAACCTGATGTTGCCGCATTCACACTGCCCGCAGTGCGCCCATCGAATCCGC
GTCTGGGAGAACATTCCTCTGCTCAGTTACCTGGCACTGCGCGGCCGGTGCTCAAATTGCAAAGCGCCGATCAGCGCCCG
CTATCCCTTGACCGAACTGGCCTGCGGCGTGCTGTCGGCGTTTGTCGCCTGGCACTTCGGCTTCGGTTGGACAGCTGCGT
GGGGGCTGGTCCTGAGTTGGGGGTTATTGGCGATGTGCCTGATCGACGCCGACCACCAATTGCTGCCGGATGTGCTGGTG
TTGCCGTTGTTGTGGCTGGGTCTGATCGTCAACAGCTTCGAGCTTTTCGTGCCTTTGCAGGCAGCGATGTGGGGGGCGGT
GGCCGGCTATCTGCTGCTGTGGTCGGTGTATTGGCTGTTCAAACTGATAACCGGCAAGGAAGGTATCGGTCACGGCGACT
TCAAGCTCCTGGCGCTGCTCGGTGCCTGGGGCGGTTGGCAGATTCTGCCGCTGACGGTCCTGCTTTCATCGCTGGTGGGT
GCTGTGGGGGGAGTGATTTTACTGCGCCTGAAAGATACCAACACCTCGACGCCGATCCCCTTTGGACCCTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.225	97.931	0.531
pilD	Vibrio campbellii strain DS40M4	51.773	97.241	0.503
pilD	Acinetobacter baumannii D1279779	50.352	97.931	0.493
pilD	Acinetobacter nosocomialis M2	50.352	97.931	0.493
pilD	Neisseria gonorrhoeae MS11	50.196	87.931	0.441