Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AABM56_RS18615 Genome accession   NZ_CP150916
Coordinates   4012016..4013356 (+) Length   446 a.a.
NCBI ID   WP_133861301.1    Uniprot ID   -
Organism   Pseudomonas aestiva strain DGS32     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4007016..4018356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABM56_RS18595 - 4007360..4008385 (+) 1026 WP_007160812.1 outer membrane protein assembly factor BamD -
  AABM56_RS18600 - 4008453..4010075 (-) 1623 WP_133861298.1 NAD+ synthase -
  AABM56_RS18605 - 4010207..4010455 (+) 249 WP_133861299.1 PP0621 family protein -
  AABM56_RS18610 pilS 4010439..4012013 (+) 1575 WP_133861300.1 ATP-binding protein Regulator
  AABM56_RS18615 pilR 4012016..4013356 (+) 1341 WP_133861301.1 sigma-54 dependent transcriptional regulator Regulator
  AABM56_RS18620 thiO 4013357..4014460 (-) 1104 WP_133861302.1 glycine oxidase ThiO -
  AABM56_RS18625 - 4014556..4015080 (+) 525 WP_133861601.1 GspH/FimT family pseudopilin -
  AABM56_RS18630 - 4015186..4015662 (+) 477 WP_133861303.1 GspH/FimT family pseudopilin -
  AABM56_RS18635 pilV 4015659..4016150 (+) 492 WP_133861304.1 type IV pilus modification protein PilV -
  AABM56_RS18640 - 4016147..4017154 (+) 1008 WP_133861602.1 PilW family protein -
  AABM56_RS18645 - 4017151..4017621 (+) 471 WP_133861305.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 48767.96 Da        Isoelectric Point: 5.8400

>NTDB_id=973731 AABM56_RS18615 WP_133861301.1 4012016..4013356(+) (pilR) [Pseudomonas aestiva strain DGS32]
MARQKVLIVDDEPDIRELLEITLGRMKLDTASAKNIADARAVLERESFDLCLTDMRLPDGSGLDLIQFIQQRFPQLPVAM
ITAFGSLETAVQALKAGAFDYLTKPVDLPRLRELVGTALRLSGPAAAAAGASETQLLGESPPMRALRGQIAKLARSQAPV
YISGESGSGKERVARLIHEQGPRAGRPFVPVNCGAIPSELVESEFFGHRKGSFTGAIEDKQGLFQAAQGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRPVGSQQELSLDVRILSATHRDLAAEVAAGTFRQDLYYRLNVIELQVPALRERREDIGALASH
MLERLARDSGLAAATLGDDALAKLKSYRFPGNVRELENMLERAYTLCEGDVIRPADLRLADAPAATATGEASLANIANLE
DHLESIERQLIMQALEETRWNRTAAAERLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=973731 AABM56_RS18615 WP_133861301.1 4012016..4013356(+) (pilR) [Pseudomonas aestiva strain DGS32]
ATGGCCCGACAGAAAGTCCTGATCGTCGACGATGAACCCGATATCCGCGAACTCCTGGAGATCACCCTGGGGCGGATGAA
ACTCGACACCGCCAGCGCCAAGAACATCGCCGACGCCCGGGCCGTCCTCGAACGGGAAAGCTTCGATCTCTGCCTGACCG
ACATGCGTCTGCCCGACGGCTCGGGACTGGACCTGATCCAGTTCATCCAGCAACGCTTTCCGCAATTGCCGGTCGCCATG
ATCACCGCCTTCGGCAGTCTGGAAACCGCGGTCCAGGCCCTCAAGGCCGGTGCGTTCGACTACCTCACCAAGCCGGTGGA
CCTGCCGCGCCTGCGCGAGCTGGTGGGCACCGCCCTGCGGCTGTCCGGGCCTGCCGCGGCAGCGGCCGGCGCCAGCGAAA
CCCAGCTGCTCGGCGAATCGCCGCCCATGCGCGCCCTGCGGGGCCAGATCGCCAAGCTGGCGCGCAGCCAGGCGCCGGTC
TACATCAGCGGGGAATCGGGCAGCGGCAAGGAGCGCGTAGCGCGGCTAATCCATGAGCAGGGTCCGCGCGCGGGCCGCCC
CTTCGTCCCGGTCAACTGCGGCGCCATCCCCTCGGAATTGGTGGAGAGCGAATTCTTCGGCCACCGCAAAGGCAGCTTCA
CCGGCGCCATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCCAGGGCGGTACCCTGTTTCTCGACGAGGTGGCCGACCTG
CCGCTGCCGATGCAGGTCAAACTCTTGCGCGCCATCCAGGAAAAGGCCGTGCGCCCGGTAGGCAGCCAGCAGGAGCTCAG
CCTGGACGTGCGCATTCTCAGCGCCACCCACCGGGATCTCGCCGCCGAGGTCGCCGCCGGGACCTTCCGCCAGGATCTCT
ACTACCGCCTCAACGTCATCGAACTGCAGGTGCCGGCCCTGCGCGAGCGCCGCGAAGACATCGGCGCCTTGGCCAGCCAC
ATGCTCGAACGTCTGGCGCGCGATTCCGGCCTGGCCGCGGCCACGCTGGGCGACGATGCCCTGGCCAAGCTCAAGAGCTA
CCGTTTCCCCGGCAATGTGCGGGAACTGGAAAACATGCTGGAGCGGGCCTACACCCTCTGCGAAGGCGACGTCATCCGCC
CGGCCGACCTGCGCCTGGCCGATGCGCCAGCGGCCACCGCCACTGGCGAAGCCAGCCTGGCCAATATCGCCAATCTGGAA
GACCACCTGGAGTCCATCGAGCGCCAGCTGATCATGCAGGCGCTCGAAGAGACCCGCTGGAATCGCACCGCCGCCGCGGA
ACGCCTGGGTCTCTCCTTCCGGTCGATGCGCTACCGCCTGAAGAAGCTCGGCATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-303)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(6-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

80.942

100

0.809
  pilR Acinetobacter baumannii strain A118

48.712

100

0.509
  luxO Vibrio cholerae strain A1552

37.783

99.103

0.374

Multiple sequence alignment