Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AABM56_RS18610 Genome accession   NZ_CP150916
Coordinates   4010439..4012013 (+) Length   524 a.a.
NCBI ID   WP_133861300.1    Uniprot ID   -
Organism   Pseudomonas aestiva strain DGS32     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4005439..4017013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABM56_RS18585 pgeF 4005484..4006215 (-) 732 WP_133861296.1 peptidoglycan editing factor PgeF -
  AABM56_RS18590 rluD 4006212..4007171 (-) 960 WP_133861297.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AABM56_RS18595 - 4007360..4008385 (+) 1026 WP_007160812.1 outer membrane protein assembly factor BamD -
  AABM56_RS18600 - 4008453..4010075 (-) 1623 WP_133861298.1 NAD+ synthase -
  AABM56_RS18605 - 4010207..4010455 (+) 249 WP_133861299.1 PP0621 family protein -
  AABM56_RS18610 pilS 4010439..4012013 (+) 1575 WP_133861300.1 ATP-binding protein Regulator
  AABM56_RS18615 pilR 4012016..4013356 (+) 1341 WP_133861301.1 sigma-54 dependent transcriptional regulator Regulator
  AABM56_RS18620 thiO 4013357..4014460 (-) 1104 WP_133861302.1 glycine oxidase ThiO -
  AABM56_RS18625 - 4014556..4015080 (+) 525 WP_133861601.1 GspH/FimT family pseudopilin -
  AABM56_RS18630 - 4015186..4015662 (+) 477 WP_133861303.1 GspH/FimT family pseudopilin -
  AABM56_RS18635 pilV 4015659..4016150 (+) 492 WP_133861304.1 type IV pilus modification protein PilV -

Sequence

Protein


Download         Length: 524 a.a.        Molecular weight: 57345.04 Da        Isoelectric Point: 7.8442

>NTDB_id=973730 AABM56_RS18610 WP_133861300.1 4010439..4012013(+) (pilS) [Pseudomonas aestiva strain DGS32]
MSAATDPGTLRADAVLRLYHLYRIVIGLALVVLISSDLDQHWLRTVDGQLFRQASWAYLAINAVLAVGQRLLRGRAFTLA
LIDILALGGLFFLAGGIASGMGSLLVVTVGVSNVLIRGRRGLLIAALAAIALLLATSYLDLRRGDSGSGYVQAAGLGTLC
FATALLVQGLVRRLLDSQALAETRATAVAELEALNALILERMRTGILVFDAEYQVLLVNPAARRLLGVDNEDTIAPLALG
LAQRLEEWERNPSIRPAPWRAYANGPLLQPSFARLQQGEGERVLTFLEDVSRIAQQAQQLKLASLGRLTAGIAHEIRNPL
GAISHAAQLLQESEELTTPDRRLAQIIQDQSRRMNRVVENVLQLSRRQQAAPQLIDLRYWAHRFAGELRPTLPAGQTLHV
KTEPGTLQTHMDPHQLGQILTNLVQNGLRYSCQKNGIGQVWLSTYRDPESDLPILEVVDDGAGVAAEQLDHLFEPFFTTE
NKGTGLGLYISRELCESNQARLGYHPLANGSCFRITFAHPRTMS

Nucleotide


Download         Length: 1575 bp        

>NTDB_id=973730 AABM56_RS18610 WP_133861300.1 4010439..4012013(+) (pilS) [Pseudomonas aestiva strain DGS32]
ATGAGCGCCGCGACTGATCCAGGCACCCTGAGAGCCGACGCGGTCCTGCGGCTCTATCATCTCTATCGCATCGTCATCGG
CCTGGCGCTGGTGGTGCTGATTTCCAGCGACCTGGATCAGCACTGGCTGCGCACCGTCGACGGCCAACTGTTCCGCCAGG
CCAGCTGGGCCTACCTCGCCATCAACGCCGTGCTGGCGGTCGGCCAGCGGCTGTTGCGTGGCCGCGCCTTCACCCTGGCG
CTGATCGATATCCTCGCCCTGGGCGGCCTGTTCTTCCTGGCCGGCGGCATCGCCAGCGGCATGGGCAGTCTGCTGGTGGT
GACCGTCGGGGTGTCCAACGTCCTGATCCGGGGCCGCCGCGGCCTGCTGATCGCCGCCCTGGCCGCCATCGCCCTGCTAC
TGGCGACCAGCTATCTCGACCTGCGCCGCGGCGACAGTGGCAGTGGCTATGTGCAGGCGGCGGGCCTGGGCACCCTCTGT
TTCGCCACGGCGCTGCTGGTGCAAGGCCTGGTCCGGCGCCTGCTGGACAGCCAGGCCCTGGCCGAAACCCGCGCCACCGC
CGTGGCCGAACTGGAAGCCCTCAACGCGCTGATCCTCGAACGCATGCGGACCGGTATCCTGGTATTCGATGCCGAATACC
AGGTGCTGCTGGTGAATCCGGCAGCCCGCCGCCTGCTGGGGGTGGACAACGAGGACACCATCGCTCCCCTGGCCCTGGGT
CTCGCCCAGCGCCTCGAGGAATGGGAGCGCAATCCCAGTATCCGGCCCGCGCCCTGGCGCGCCTATGCCAACGGCCCCCT
GTTGCAACCCAGCTTCGCCCGCCTGCAGCAGGGCGAGGGTGAGCGGGTGCTGACCTTTCTCGAAGACGTCTCACGCATCG
CCCAGCAAGCCCAGCAACTCAAGCTCGCCTCCCTCGGCCGTCTCACCGCCGGCATCGCCCACGAGATCCGCAATCCGCTG
GGCGCCATCAGTCACGCCGCGCAACTGCTGCAGGAATCCGAAGAACTGACCACGCCGGATCGGCGCCTGGCTCAGATCAT
CCAGGACCAGTCGCGGCGGATGAACCGGGTGGTGGAAAACGTCCTGCAGCTGTCACGCCGCCAGCAGGCCGCCCCCCAGC
TGATCGATCTGCGCTACTGGGCGCACCGTTTCGCCGGGGAGCTGCGCCCTACCCTGCCCGCCGGCCAGACGCTGCACGTC
AAGACCGAGCCAGGCACCCTGCAGACGCACATGGATCCTCACCAGCTGGGCCAGATCCTGACCAACCTGGTGCAGAACGG
CCTGCGCTACAGCTGCCAGAAGAATGGCATCGGCCAGGTCTGGCTCAGCACCTACCGCGATCCGGAAAGCGACCTGCCCA
TCCTCGAGGTGGTCGACGACGGAGCCGGCGTCGCCGCCGAGCAGCTCGACCACCTGTTCGAGCCCTTCTTCACCACCGAA
AACAAGGGGACCGGGCTGGGCCTGTACATCTCCCGCGAGCTTTGCGAGAGCAACCAGGCCAGACTTGGCTATCATCCCTT
GGCGAATGGCAGCTGTTTTCGCATCACCTTCGCCCATCCCCGCACAATGAGCTGA

Domains

Predicted by InterproScan.

PAS domain (PAS_8)

(198-237)

His Kinase A (phospho-acceptor) domain (HisKA)

(304-369)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(412-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.423

99.237

0.59

Multiple sequence alignment