Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   AABD49_RS02920 Genome accession   NZ_CP150909
Coordinates   595336..595809 (-) Length   157 a.a.
NCBI ID   WP_069536420.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain vp-HL-202008     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 590336..600809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD49_RS02900 (AABD49_02900) coaE 590849..591463 (-) 615 WP_005480887.1 dephospho-CoA kinase -
  AABD49_RS02905 (AABD49_02905) pilD 591464..592333 (-) 870 WP_025533026.1 A24 family peptidase Machinery gene
  AABD49_RS02910 (AABD49_02910) pilC 592398..593621 (-) 1224 WP_005493981.1 type II secretion system F family protein Machinery gene
  AABD49_RS02915 (AABD49_02915) pilB 593645..595330 (-) 1686 WP_069536419.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AABD49_RS02920 (AABD49_02920) pilA 595336..595809 (-) 474 WP_069536420.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  AABD49_RS02925 (AABD49_02925) nadC 596072..596959 (-) 888 WP_015297249.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AABD49_RS02930 (AABD49_02930) ampD 597052..597603 (+) 552 WP_025554880.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AABD49_RS02935 (AABD49_02935) pdhR 598009..598776 (+) 768 WP_005462576.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16666.33 Da        Isoelectric Point: 9.1138

>NTDB_id=973687 AABD49_RS02920 WP_069536420.1 595336..595809(-) (pilA) [Vibrio parahaemolyticus strain vp-HL-202008]
MKHRKQKKQQGFTLIELMIVVAIIGILSAFAVPAYQNYTKKATLSEFPKAAAAAKLAVELCAHENASNETTFISECVKKE
NGIPAKFVLNNIEISVVKATDASVSGAIAVIAAADQVKGPIAKGEQYIMAASYKTQGLEWGASCKAGGKAQTDYCPN

Nucleotide


Download         Length: 474 bp        

>NTDB_id=973687 AABD49_RS02920 WP_069536420.1 595336..595809(-) (pilA) [Vibrio parahaemolyticus strain vp-HL-202008]
ATGAAACACCGTAAACAGAAAAAACAGCAAGGTTTTACGCTAATTGAATTGATGATTGTGGTGGCGATTATCGGCATCTT
ATCTGCTTTCGCAGTTCCTGCTTACCAAAATTATACTAAGAAAGCGACATTGTCAGAATTTCCAAAAGCAGCTGCGGCAG
CCAAATTAGCAGTAGAATTATGTGCCCATGAGAATGCCTCAAATGAAACAACATTTATTAGTGAATGTGTAAAGAAAGAA
AATGGAATTCCCGCTAAATTCGTTTTGAATAATATTGAAATTAGCGTTGTTAAAGCCACAGATGCTAGCGTTTCTGGTGC
GATAGCAGTTATTGCCGCAGCTGATCAAGTTAAGGGACCTATTGCTAAAGGCGAACAATATATCATGGCTGCATCATATA
AAACTCAAGGCTTAGAGTGGGGGGCTTCATGTAAAGCTGGCGGTAAAGCACAAACAGACTACTGCCCAAACTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Vibrio campbellii strain DS40M4

56.051

100

0.561
  pilA Haemophilus influenzae Rd KW20

42.361

91.72

0.389
  pilA Haemophilus influenzae 86-028NP

41.379

92.357

0.382

Multiple sequence alignment