Detailed information NTG0973684

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AABD49_RS02905
• Genome accession: NZ_CP150909
• Coordinates: 591464..592333 (-)
• Length: 289 a.a.
• NCBI ID: WP_025533026.1
• Uniprot ID: A0AA41A9T5
• Organism: Vibrio parahaemolyticus strain vp-HL-202008
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 586464..597333

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABD49_RS02870 (AABD49_02870)	rpsP	587478..587726 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
AABD49_RS02875 (AABD49_02875)	rimM	587755..588303 (+)	549	WP_047123098.1	ribosome maturation factor RimM	-
AABD49_RS02880 (AABD49_02880)	trmD	588331..589074 (+)	744	WP_047123099.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
AABD49_RS02885 (AABD49_02885)	rplS	589116..589469 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
AABD49_RS02890 (AABD49_02890)	yacG	589818..590012 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
AABD49_RS02895 (AABD49_02895)	zapD	590081..590821 (-)	741	WP_005480890.1	cell division protein ZapD	-
AABD49_RS02900 (AABD49_02900)	coaE	590849..591463 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
AABD49_RS02905 (AABD49_02905)	pilD	591464..592333 (-)	870	WP_025533026.1	A24 family peptidase	Machinery gene
AABD49_RS02910 (AABD49_02910)	pilC	592398..593621 (-)	1224	WP_005493981.1	type II secretion system F family protein	Machinery gene
AABD49_RS02915 (AABD49_02915)	pilB	593645..595330 (-)	1686	WP_069536419.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AABD49_RS02920 (AABD49_02920)	pilA	595336..595809 (-)	474	WP_069536420.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
AABD49_RS02925 (AABD49_02925)	nadC	596072..596959 (-)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32405.49 Da
• Isoelectric Point: 7.1971

>NTDB_id=973684 AABD49_RS02905 WP_025533026.1 591464..592333(-) (pilD) [Vibrio parahaemolyticus strain vp-HL-202008]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=973684 AABD49_RS02905 WP_025533026.1 591464..592333(-) (pilD) [Vibrio parahaemolyticus strain vp-HL-202008]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGTTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCCGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTTCAGTTACGACTACAAAAACAAGGCATAGAGAGAGCTTTCCCTTTCGGCCCGTATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45