Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AABB93_RS17735 Genome accession   NZ_CP150895
Coordinates   3960493..3961041 (+) Length   182 a.a.
NCBI ID   WP_012886084.1    Uniprot ID   D2BVZ8
Organism   Dickeya zeae strain MS3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 3961905..3962711 3960493..3961041 flank 864


Gene organization within MGE regions


Location: 3960493..3962711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABB93_RS17735 ssb 3960493..3961041 (+) 549 WP_012886084.1 single-stranded DNA-binding protein Machinery gene
  AABB93_RS17740 - 3961147..3961335 (+) 189 WP_236377650.1 hypothetical protein -
  AABB93_RS17745 - 3961446..3961770 (-) 325 Protein_3466 helix-turn-helix domain-containing protein -
  AABB93_RS17750 - 3961941..3962711 (+) 771 Protein_3467 DDE-type integrase/transposase/recombinase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19464.46 Da        Isoelectric Point: 5.2440

>NTDB_id=973597 AABB93_RS17735 WP_012886084.1 3960493..3961041(+) (ssb) [Dickeya zeae strain MS3]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVDISGSMQMLGGRTGGGAPAGGNMGGNTGGGNAPQGGWGQPQQPQQANQFSGGGQSR
PQQSAPMPGNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=973597 AABB93_RS17735 WP_012886084.1 3960493..3961041(+) (ssb) [Dickeya zeae strain MS3]
ATGGCCAGCAGAGGCGTTAACAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAGCGTACAG
AGTGGCACCGCGTCGCCCTCTACGGCAAGCTGGCGGAAATCGCCGGTGAGTACCTGCGCAAAGGCTCTCAGGTGTATATC
GAAGGTCAGTTGCGTACCCGTAAATGGCAGGATCAGGGCGGCCAGGATCGCTACACCACTGAAGTGGTGGTCGATATCTC
CGGCAGCATGCAAATGCTGGGCGGCCGTACCGGCGGCGGTGCACCTGCTGGTGGCAACATGGGCGGCAATACAGGTGGTG
GTAACGCACCACAAGGTGGTTGGGGTCAACCGCAACAGCCGCAGCAAGCCAACCAGTTCAGCGGTGGCGGCCAGTCACGT
CCGCAGCAAAGCGCCCCGATGCCGGGCAACGAACCGCCGATGGATTTTGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D2BVZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.656

100

0.753
  ssb Glaesserella parasuis strain SC1401

55.319

100

0.571
  ssb Neisseria meningitidis MC58

45.263

100

0.473
  ssb Neisseria gonorrhoeae MS11

45.263

100

0.473

Multiple sequence alignment