Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WOB24_RS02655 Genome accession   NZ_CP150891
Coordinates   547588..548079 (+) Length   163 a.a.
NCBI ID   WP_341304496.1    Uniprot ID   -
Organism   Pseudomonas sp. TMP25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 542588..553079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOB24_RS02640 (WOB24_02640) bfr 542656..543120 (+) 465 WP_341304494.1 bacterioferritin -
  WOB24_RS02645 (WOB24_02645) uvrA 543213..546047 (-) 2835 WP_339081156.1 excinuclease ABC subunit UvrA -
  WOB24_RS02650 (WOB24_02650) - 546182..547570 (+) 1389 WP_341304495.1 MFS transporter -
  WOB24_RS02655 (WOB24_02655) ssb 547588..548079 (+) 492 WP_341304496.1 single-stranded DNA-binding protein Machinery gene
  WOB24_RS02660 (WOB24_02660) - 548259..548513 (-) 255 WP_341304497.1 hypothetical protein -
  WOB24_RS02665 (WOB24_02665) - 549109..549993 (+) 885 WP_339081160.1 sugar nucleotide-binding protein -
  WOB24_RS02670 (WOB24_02670) - 549986..550918 (+) 933 WP_339081161.1 NAD-dependent epimerase/dehydratase family protein -
  WOB24_RS02675 (WOB24_02675) - 550974..551657 (-) 684 WP_341304498.1 OmpW family outer membrane protein -
  WOB24_RS02680 (WOB24_02680) - 551898..552668 (+) 771 WP_339081163.1 DUF3450 domain-containing protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18032.10 Da        Isoelectric Point: 5.3109

>NTDB_id=973516 WOB24_RS02655 WP_341304496.1 547588..548079(+) (ssb) [Pseudomonas sp. TMP25]
MARGVNKVILVGTCGQDPETRFLPSGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSLFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGVKRYTTEIIVDMQGTMQLLGGRPDNAGGDSAPRQQRPAPQREPQSSTPRPTPQPATQPAADFDSFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=973516 WOB24_RS02655 WP_341304496.1 547588..548079(+) (ssb) [Pseudomonas sp. TMP25]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGCGGACAGGACCCGGAAACTCGCTTCCTGCCCAGCGGTAA
TGCGGTCACCAACCTGAGCCTGGCGACCAGCGAGCAGTGGACCGATAAGCAGACCGGTCAAAAGGTCGAAAAAACCGAGT
GGCACCGCGTATCGCTGTTCGGCAAAGTGGCAGAAATTGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAG
GGTAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGTGTGAAGCGTTACACCACCGAAATCATTGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGTCGTCCAGACAATGCCGGCGGTGACTCGGCTCCGCGCCAACAGCGTCCAGCGCCGCAGCGTG
AGCCTCAATCGTCAACGCCCCGTCCAACGCCGCAACCCGCGACTCAGCCCGCCGCAGATTTCGACAGCTTTGACGACGAC
ATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.618

100

0.607
  ssb Glaesserella parasuis strain SC1401

46.448

100

0.521
  ssb Neisseria meningitidis MC58

45.81

100

0.503
  ssb Neisseria gonorrhoeae MS11

45.251

100

0.497

Multiple sequence alignment