Detailed information
Bioinformatically predicted
Overview
| Name | amiF | Type | Regulator |
| Locus tag | WMY90_RS04705 | Genome accession | NZ_CP150875 |
| Coordinates | 925826..926062 (-) | Length | 78 a.a. |
| NCBI ID | WP_308123564.1 | Uniprot ID | - |
| Organism | Streptococcus thermophilus strain TCI125 | ||
| Function | internalize XIP (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 903257..969705 | 925826..926062 | within | 0 |
Gene organization within MGE regions
Location: 903257..969705
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WMY90_RS04595 (WMY90_04595) | liaF | 903265..903963 (-) | 699 | WP_011226289.1 | cell wall-active antibiotics response protein LiaF | - |
| WMY90_RS04600 (WMY90_04600) | - | 904218..904385 (-) | 168 | WP_232089277.1 | ion channel | - |
| WMY90_RS04605 (WMY90_04605) | stkP/pknB | 905022..906893 (-) | 1872 | WP_002946880.1 | Stk1 family PASTA domain-containing Ser/Thr kinase | Regulator |
| WMY90_RS04610 (WMY90_04610) | - | 906893..907630 (-) | 738 | WP_002946881.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| WMY90_RS04615 (WMY90_04615) | rsmB | 907674..908996 (-) | 1323 | WP_014608533.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| WMY90_RS04620 (WMY90_04620) | fmt | 908986..909921 (-) | 936 | WP_002946883.1 | methionyl-tRNA formyltransferase | - |
| WMY90_RS04625 (WMY90_04625) | - | 909939..912335 (-) | 2397 | WP_176243306.1 | primosomal protein N' | - |
| WMY90_RS04630 (WMY90_04630) | rpoZ | 912477..912791 (-) | 315 | WP_002951415.1 | DNA-directed RNA polymerase subunit omega | - |
| WMY90_RS04635 (WMY90_04635) | gmk | 912813..913442 (-) | 630 | WP_022096878.1 | guanylate kinase | - |
| WMY90_RS04640 (WMY90_04640) | ftsY | 913675..915066 (-) | 1392 | WP_011681410.1 | signal recognition particle-docking protein FtsY | - |
| WMY90_RS04645 (WMY90_04645) | - | 915077..915895 (-) | 819 | WP_011681411.1 | Cof-type HAD-IIB family hydrolase | - |
| WMY90_RS04650 (WMY90_04650) | - | 915888..916682 (-) | 795 | WP_022096877.1 | HAD family hydrolase | - |
| WMY90_RS04655 (WMY90_04655) | - | 916866..917243 (+) | 378 | WP_011226300.1 | GntR family transcriptional regulator | - |
| WMY90_RS04660 (WMY90_04660) | - | 917248..917946 (+) | 699 | WP_022096876.1 | ABC transporter ATP-binding protein | - |
| WMY90_RS04665 (WMY90_04665) | - | 917958..918743 (+) | 786 | WP_002951425.1 | hypothetical protein | - |
| WMY90_RS04670 (WMY90_04670) | amiF | 918793..919722 (-) | 930 | WP_002951426.1 | ATP-binding cassette domain-containing protein | Regulator |
| WMY90_RS04675 (WMY90_04675) | amiE | 919715..920800 (-) | 1086 | WP_002946408.1 | ABC transporter ATP-binding protein | Regulator |
| WMY90_RS04680 (WMY90_04680) | amiD | 920810..921736 (-) | 927 | WP_002946409.1 | oligopeptide ABC transporter permease OppC | Regulator |
| WMY90_RS04685 (WMY90_04685) | amiC | 921736..923229 (-) | 1494 | WP_260215011.1 | ABC transporter permease | Regulator |
| WMY90_RS04690 (WMY90_04690) | amiA | 923291..925258 (-) | 1968 | WP_096811568.1 | peptide ABC transporter substrate-binding protein | Regulator |
| WMY90_RS04695 (WMY90_04695) | - | 925462..925652 (-) | 191 | Protein_921 | IS3 family transposase | - |
| WMY90_RS04700 (WMY90_04700) | amiF | 925643..925813 (-) | 171 | WP_014608546.1 | hypothetical protein | Regulator |
| WMY90_RS04705 (WMY90_04705) | amiF | 925826..926062 (-) | 237 | WP_308123564.1 | ABC transporter ATP-binding protein | Regulator |
| WMY90_RS04710 (WMY90_04710) | - | 926042..926402 (-) | 361 | Protein_924 | TatD family hydrolase | - |
| WMY90_RS04715 (WMY90_04715) | - | 926751..927956 (+) | 1206 | WP_011227415.1 | OFA family MFS transporter | - |
| WMY90_RS04720 (WMY90_04720) | - | 928002..929355 (-) | 1354 | Protein_926 | IS3 family transposase | - |
| WMY90_RS04725 (WMY90_04725) | pta | 929441..930424 (-) | 984 | WP_022097032.1 | phosphate acetyltransferase | - |
| WMY90_RS04730 (WMY90_04730) | - | 930438..931334 (-) | 897 | WP_011226316.1 | RluA family pseudouridine synthase | - |
| WMY90_RS04735 (WMY90_04735) | - | 931331..932167 (-) | 837 | WP_022097031.1 | NAD kinase | - |
| WMY90_RS04740 (WMY90_04740) | - | 932139..932813 (-) | 675 | WP_002951443.1 | GTP pyrophosphokinase family protein | - |
| WMY90_RS04745 (WMY90_04745) | - | 932909..933484 (+) | 576 | WP_002951444.1 | CYTH domain-containing protein | - |
| WMY90_RS04750 (WMY90_04750) | - | 933847..934818 (+) | 972 | WP_260215000.1 | ribose-phosphate diphosphokinase | - |
| WMY90_RS04755 (WMY90_04755) | - | 934822..935934 (+) | 1113 | WP_002948029.1 | cysteine desulfurase family protein | - |
| WMY90_RS04760 (WMY90_04760) | - | 935936..936283 (+) | 348 | WP_002948028.1 | DUF1831 domain-containing protein | - |
| WMY90_RS04765 (WMY90_04765) | - | 936427..937086 (+) | 660 | WP_002948027.1 | redox-sensing transcriptional repressor Rex | - |
| WMY90_RS04770 (WMY90_04770) | - | 937079..937774 (+) | 696 | WP_002948026.1 | gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | - |
| WMY90_RS04775 (WMY90_04775) | radC | 937827..938513 (-) | 687 | WP_002948025.1 | DNA repair protein RadC | - |
| WMY90_RS04780 (WMY90_04780) | - | 938562..940346 (-) | 1785 | WP_002948024.1 | rhamnan synthesis F family protein | - |
| WMY90_RS04785 (WMY90_04785) | - | 940343..941398 (-) | 1056 | WP_002948022.1 | glycosyltransferase | - |
| WMY90_RS04790 (WMY90_04790) | - | 941418..942623 (-) | 1206 | WP_014727633.1 | ABC transporter ATP-binding protein | - |
| WMY90_RS04795 (WMY90_04795) | - | 942623..943432 (-) | 810 | WP_002948020.1 | ABC transporter permease | - |
| WMY90_RS04800 (WMY90_04800) | - | 943416..944372 (-) | 957 | WP_014727634.1 | glycosyltransferase family 2 protein | - |
| WMY90_RS04805 (WMY90_04805) | - | 944369..945517 (-) | 1149 | WP_002948014.1 | glycosyltransferase family 1 protein | - |
| WMY90_RS04810 (WMY90_04810) | - | 945626..946636 (-) | 1011 | WP_022097029.1 | glycosyltransferase family A protein | - |
| WMY90_RS04815 (WMY90_04815) | - | 946636..947910 (-) | 1275 | WP_022097028.1 | polysaccharide biosynthesis protein transporter | - |
| WMY90_RS04820 (WMY90_04820) | - | 947903..948235 (-) | 333 | WP_011226332.1 | DUF2304 domain-containing protein | - |
| WMY90_RS04825 (WMY90_04825) | - | 948241..948936 (-) | 696 | WP_173940715.1 | glycosyltransferase family 2 protein | - |
| WMY90_RS04830 (WMY90_04830) | rfbD | 949013..949864 (-) | 852 | WP_022097027.1 | dTDP-4-dehydrorhamnose reductase | - |
| WMY90_RS04835 (WMY90_04835) | - | 949941..951275 (-) | 1335 | WP_002946422.1 | DUF6056 family protein | - |
| WMY90_RS04840 (WMY90_04840) | - | 951388..952308 (-) | 921 | WP_116920321.1 | glycosyltransferase family 2 protein | - |
| WMY90_RS04845 (WMY90_04845) | - | 952368..953783 (-) | 1416 | WP_022097026.1 | DUF2142 domain-containing protein | - |
| WMY90_RS04850 (WMY90_04850) | - | 954117..954452 (-) | 336 | WP_002891474.1 | metal-sulfur cluster assembly factor | - |
| WMY90_RS04855 (WMY90_04855) | rpoD | 954506..955615 (-) | 1110 | WP_011226338.1 | RNA polymerase sigma factor RpoD | - |
| WMY90_RS04860 (WMY90_04860) | dnaG | 955619..957430 (-) | 1812 | WP_011681448.1 | DNA primase | - |
| WMY90_RS04865 (WMY90_04865) | mscL | 957571..957654 (+) | 84 | Protein_955 | large conductance mechanosensitive channel protein MscL | - |
| WMY90_RS04870 (WMY90_04870) | rpsU | 957814..957990 (-) | 177 | WP_082309068.1 | 30S ribosomal protein S21 | - |
| WMY90_RS04875 (WMY90_04875) | - | 958185..958979 (-) | 795 | WP_022097025.1 | ABC transporter substrate-binding protein | - |
| WMY90_RS04880 (WMY90_04880) | - | 959041..960150 (-) | 1110 | WP_022097024.1 | aminotransferase | - |
| WMY90_RS04885 (WMY90_04885) | - | 960497..961294 (-) | 798 | WP_022097023.1 | transporter substrate-binding domain-containing protein | - |
| WMY90_RS04890 (WMY90_04890) | - | 961291..962121 (-) | 831 | WP_022097022.1 | transporter substrate-binding domain-containing protein | - |
| WMY90_RS04895 (WMY90_04895) | - | 962335..962799 (-) | 465 | WP_011681454.1 | 8-oxo-dGTP diphosphatase | - |
| WMY90_RS04900 (WMY90_04900) | uvrB | 962844..964835 (-) | 1992 | WP_002953358.1 | excinuclease ABC subunit UvrB | - |
| WMY90_RS04905 (WMY90_04905) | - | 964982..965449 (-) | 468 | WP_022097021.1 | hypothetical protein | - |
| WMY90_RS04910 (WMY90_04910) | - | 965522..966458 (-) | 937 | Protein_964 | type II CAAX endopeptidase family protein | - |
| WMY90_RS04915 (WMY90_04915) | - | 966657..968867 (+) | 2211 | WP_173940613.1 | ABC transporter substrate-binding protein/permease | - |
| WMY90_RS04920 (WMY90_04920) | - | 968867..969607 (+) | 741 | WP_002945131.1 | amino acid ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 78 a.a. Molecular weight: 8685.28 Da Isoelectric Point: 10.0875
>NTDB_id=973227 WMY90_RS04705 WP_308123564.1 925826..926062(-) (amiF) [Streptococcus thermophilus strain TCI125]
MIHSLSGGQRQRIGIARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVI
MIHSLSGGQRQRIGIARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVI
Nucleotide
Download Length: 237 bp
>NTDB_id=973227 WMY90_RS04705 WP_308123564.1 925826..926062(-) (amiF) [Streptococcus thermophilus strain TCI125]
ATTATTCACTCACTTTCTGGGGGACAACGTCAACGTATCGGGATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTAT
CGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGCCCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGT
TGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGGTTCGTTTCATTTCTGACCGTATCGCTGTTATCTAA
ATTATTCACTCACTTTCTGGGGGACAACGTCAACGTATCGGGATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTAT
CGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGCCCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGT
TGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGGTTCGTTTCATTTCTGACCGTATCGCTGTTATCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| amiF | Streptococcus salivarius strain HSISS4 |
97.368 |
97.436 |
0.949 |
| amiF | Streptococcus thermophilus LMD-9 |
97.368 |
97.436 |
0.949 |
| amiF | Streptococcus thermophilus LMG 18311 |
97.368 |
97.436 |
0.949 |
| amiE | Streptococcus thermophilus LMG 18311 |
52.055 |
93.59 |
0.487 |
| amiE | Streptococcus thermophilus LMD-9 |
52.055 |
93.59 |
0.487 |
| amiE | Streptococcus salivarius strain HSISS4 |
52.055 |
93.59 |
0.487 |
| oppD | Streptococcus mutans UA159 |
48.684 |
97.436 |
0.474 |