Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   WMY90_RS04700 Genome accession   NZ_CP150875
Coordinates   925643..925813 (-) Length   56 a.a.
NCBI ID   WP_014608546.1    Uniprot ID   A0A2U2MH52
Organism   Streptococcus thermophilus strain TCI125     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 920643..930813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMY90_RS04680 (WMY90_04680) amiD 920810..921736 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  WMY90_RS04685 (WMY90_04685) amiC 921736..923229 (-) 1494 WP_260215011.1 ABC transporter permease Regulator
  WMY90_RS04690 (WMY90_04690) amiA 923291..925258 (-) 1968 WP_096811568.1 peptide ABC transporter substrate-binding protein Regulator
  WMY90_RS04695 (WMY90_04695) - 925462..925652 (-) 191 Protein_921 IS3 family transposase -
  WMY90_RS04700 (WMY90_04700) amiF 925643..925813 (-) 171 WP_014608546.1 hypothetical protein Regulator
  WMY90_RS04705 (WMY90_04705) amiF 925826..926062 (-) 237 WP_308123564.1 ABC transporter ATP-binding protein Regulator
  WMY90_RS04710 (WMY90_04710) - 926042..926402 (-) 361 Protein_924 TatD family hydrolase -
  WMY90_RS04715 (WMY90_04715) - 926751..927956 (+) 1206 WP_011227415.1 OFA family MFS transporter -
  WMY90_RS04720 (WMY90_04720) - 928002..929355 (-) 1354 Protein_926 IS3 family transposase -
  WMY90_RS04725 (WMY90_04725) pta 929441..930424 (-) 984 WP_022097032.1 phosphate acetyltransferase -

Sequence

Protein


Download         Length: 56 a.a.        Molecular weight: 6495.42 Da        Isoelectric Point: 4.6436

>NTDB_id=973226 WMY90_RS04700 WP_014608546.1 925643..925813(-) (amiF) [Streptococcus thermophilus strain TCI125]
MEVAETEELYNNPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMV

Nucleotide


Download         Length: 171 bp        

>NTDB_id=973226 WMY90_RS04700 WP_014608546.1 925643..925813(-) (amiF) [Streptococcus thermophilus strain TCI125]
GTGGAAGTTGCTGAGACAGAAGAGCTCTACAACAATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTAT
TCCAGATCCAATCTTGGAACGTAAGAAAGTCTTGAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAG
AAATGGTATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(1-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

98.214

100

0.982
  amiF Streptococcus thermophilus LMD-9

98.214

100

0.982
  amiF Streptococcus salivarius strain HSISS4

98.214

100

0.982

Multiple sequence alignment