Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   WMY90_RS04685 Genome accession   NZ_CP150875
Coordinates   921736..923229 (-) Length   497 a.a.
NCBI ID   WP_260215011.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TCI125     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 916736..928229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMY90_RS04655 (WMY90_04655) - 916866..917243 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  WMY90_RS04660 (WMY90_04660) - 917248..917946 (+) 699 WP_022096876.1 ABC transporter ATP-binding protein -
  WMY90_RS04665 (WMY90_04665) - 917958..918743 (+) 786 WP_002951425.1 hypothetical protein -
  WMY90_RS04670 (WMY90_04670) amiF 918793..919722 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  WMY90_RS04675 (WMY90_04675) amiE 919715..920800 (-) 1086 WP_002946408.1 ABC transporter ATP-binding protein Regulator
  WMY90_RS04680 (WMY90_04680) amiD 920810..921736 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  WMY90_RS04685 (WMY90_04685) amiC 921736..923229 (-) 1494 WP_260215011.1 ABC transporter permease Regulator
  WMY90_RS04690 (WMY90_04690) amiA 923291..925258 (-) 1968 WP_096811568.1 peptide ABC transporter substrate-binding protein Regulator
  WMY90_RS04695 (WMY90_04695) - 925462..925652 (-) 191 Protein_921 IS3 family transposase -
  WMY90_RS04700 (WMY90_04700) amiF 925643..925813 (-) 171 WP_014608546.1 hypothetical protein Regulator
  WMY90_RS04705 (WMY90_04705) amiF 925826..926062 (-) 237 WP_308123564.1 ABC transporter ATP-binding protein Regulator
  WMY90_RS04710 (WMY90_04710) - 926042..926402 (-) 361 Protein_924 TatD family hydrolase -
  WMY90_RS04715 (WMY90_04715) - 926751..927956 (+) 1206 WP_011227415.1 OFA family MFS transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55698.57 Da        Isoelectric Point: 9.9897

>NTDB_id=973224 WMY90_RS04685 WP_260215011.1 921736..923229(-) (amiC) [Streptococcus thermophilus strain TCI125]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERLGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMALFKNTIFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWICRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=973224 WMY90_RS04685 WP_260215011.1 921736..923229(-) (amiC) [Streptococcus thermophilus strain TCI125]
ATGAAAAAATACATTTTATTGAGAACACTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCTTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAAGACCCAAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGTTTGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TGGTTGGCGTTTGCATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCAAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGAAATGATCCATACAC
AGCTACCAAGAGTCGTTATCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACTCTTTAAAAACACAATTTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAAATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTTGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACATATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMG 18311

99.799

100

0.998
  amiC Streptococcus thermophilus LMD-9

98.994

100

0.99
  amiC Streptococcus salivarius strain HSISS4

97.183

100

0.972

Multiple sequence alignment