Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   ACL6EQ_RS13465 Genome accession   NZ_CP178716
Coordinates   2584705..2585400 (-) Length   231 a.a.
NCBI ID   WP_014480455.1    Uniprot ID   -
Organism   Bacillus subtilis strain SY1483     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2579705..2590400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EQ_RS13440 (ACL6EQ_13440) minD 2580641..2581447 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  ACL6EQ_RS13445 (ACL6EQ_13445) minC 2581449..2582129 (-) 681 WP_029318187.1 septum site-determining protein MinC -
  ACL6EQ_RS13450 (ACL6EQ_13450) mreD 2582182..2582700 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  ACL6EQ_RS13455 (ACL6EQ_13455) mreC 2582697..2583569 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  ACL6EQ_RS13460 (ACL6EQ_13460) mreB 2583600..2584613 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ACL6EQ_RS13465 (ACL6EQ_13465) ysxA/radC 2584705..2585400 (-) 696 WP_014480455.1 RadC family protein Machinery gene
  ACL6EQ_RS13470 (ACL6EQ_13470) maf 2585437..2586006 (-) 570 WP_024572904.1 Maf family nucleotide pyrophosphatase -
  ACL6EQ_RS13475 (ACL6EQ_13475) spoIIB 2586159..2587157 (-) 999 WP_128474144.1 stage II sporulation protein SpoIIB -
  ACL6EQ_RS13480 (ACL6EQ_13480) comC 2587291..2588037 (-) 747 WP_072592551.1 prepilin peptidase Machinery gene
  ACL6EQ_RS13485 (ACL6EQ_13485) folC 2588178..2589470 (-) 1293 WP_413358648.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26128.44 Da        Isoelectric Point: 7.9285

>NTDB_id=972876 ACL6EQ_RS13465 WP_014480455.1 2584705..2585400(-) (ysxA/radC) [Bacillus subtilis strain SY1483]
MVIHDLPLKLKDFPIKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=972876 ACL6EQ_RS13465 WP_014480455.1 2584705..2585400(-) (ysxA/radC) [Bacillus subtilis strain SY1483]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATCAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACAGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATTCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424