Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WMY94_RS00930 Genome accession   NZ_CP150826
Coordinates   192285..192803 (+) Length   172 a.a.
NCBI ID   WP_014562762.1    Uniprot ID   U4QEA2
Organism   Lactobacillus helveticus strain 191404     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 193265..197818 192285..192803 flank 462


Gene organization within MGE regions


Location: 192285..197818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMY94_RS00930 (WMY94_00925) ssb 192285..192803 (+) 519 WP_014562762.1 single-stranded DNA-binding protein Machinery gene
  WMY94_RS00935 (WMY94_00930) rpsR 192832..193068 (+) 237 WP_003549366.1 30S ribosomal protein S18 -
  WMY94_RS00940 (WMY94_00935) - 193265..194530 (+) 1266 WP_406842541.1 ISL3 family transposase -
  WMY94_RS00945 (WMY94_00940) - 194799..194972 (+) 174 WP_023062009.1 hypothetical protein -
  WMY94_RS00950 (WMY94_00945) - 194969..195103 (+) 135 WP_003624899.1 hypothetical protein -
  WMY94_RS00955 (WMY94_00950) - 195210..196802 (-) 1593 WP_172988226.1 ABC transporter ATP-binding protein -
  WMY94_RS00960 (WMY94_00955) - 196780..197271 (-) 492 WP_014562766.1 lanthionine synthetase LanC family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18671.32 Da        Isoelectric Point: 5.2241

>NTDB_id=972691 WMY94_RS00930 WP_014562762.1 192285..192803(+) (ssb) [Lactobacillus helveticus strain 191404]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFISCVIWRKSAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKDRKARGQNGGYTPNTGNAGAPSTNNFQNNGGSQNNAQNNNQSNNAQDPFAGSG
DPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=972691 WMY94_RS00930 WP_014562762.1 192285..192803(+) (ssb) [Lactobacillus helveticus strain 191404]
ATGATTAATAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTGCGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGCCAAGGTGAGAGGGGCGCGGACTTTATCAGCTGTGTAATTT
GGAGGAAATCTGCAGAAAACTTCTGCAATTTTACTTCAAAGGGTTCATTGGTTGGTATTGATGGCCGTATTCAAACCAGA
AGTTATGACAATAAAGATGGGCAAAGAGTATATGTAACTGAAGTTGTCGTTGATAACTTCGCATTGCTCGAATCACGCAA
GGATCGTAAAGCCCGCGGTCAAAATGGTGGTTATACACCAAACACTGGAAATGCTGGTGCACCAAGCACTAACAACTTCC
AAAATAATGGTGGATCACAAAATAATGCTCAGAATAATAATCAATCAAACAACGCTCAAGATCCATTTGCAGGCTCTGGC
GATCCAATTGATATTTCTGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U4QEA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.777

100

0.622
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.25

100

0.576
  ssb Glaesserella parasuis strain SC1401

34.807

100

0.366

Multiple sequence alignment