Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   WOC64_RS00110 Genome accession   NZ_CP150788
Coordinates   13837..14340 (-) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain TUM20816     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 539..18403 13837..14340 within 0


Gene organization within MGE regions


Location: 539..18403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOC64_RS00010 (WOC64_00010) - 539..880 (-) 342 WP_000358778.1 hypothetical protein -
  WOC64_RS00015 (WOC64_00015) - 883..1410 (-) 528 WP_000771356.1 spore coat protein -
  WOC64_RS00020 (WOC64_00020) - 1461..1679 (-) 219 WP_000448775.1 capsid morphogenesis B protein -
  WOC64_RS00025 (WOC64_00025) - 1697..2275 (-) 579 WP_000846292.1 hypothetical protein -
  WOC64_RS00030 (WOC64_00030) - 2287..2628 (-) 342 WP_001161659.1 hypothetical protein -
  WOC64_RS00035 (WOC64_00035) - 2975..3616 (-) 642 WP_001019770.1 hypothetical protein -
  WOC64_RS00040 (WOC64_00040) - 3618..3890 (-) 273 WP_001149387.1 hypothetical protein -
  WOC64_RS00045 (WOC64_00045) - 3877..4680 (-) 804 WP_000148371.1 bifunctional DNA primase/polymerase -
  WOC64_RS00050 (WOC64_00050) - 4851..6464 (-) 1614 WP_033854769.1 hypothetical protein -
  WOC64_RS00055 (WOC64_00055) tscT 6539..6838 (-) 300 WP_031904328.1 type II toxin-antitoxin system toxin TscT -
  WOC64_RS00060 (WOC64_00060) tscA 6841..7050 (-) 210 WP_001060744.1 type II toxin-antitoxin system antitoxin TscA -
  WOC64_RS00065 (WOC64_00065) - 7043..7189 (-) 147 WP_000784888.1 hypothetical protein -
  WOC64_RS00070 (WOC64_00070) - 7201..7473 (-) 273 WP_000867969.1 hypothetical protein -
  WOC64_RS00075 (WOC64_00075) - 7506..7718 (-) 213 WP_000608987.1 helix-turn-helix transcriptional regulator -
  WOC64_RS00080 (WOC64_00080) - 7854..8558 (+) 705 WP_406818799.1 helix-turn-helix domain-containing protein -
  WOC64_RS00085 (WOC64_00085) - 8684..9205 (+) 522 WP_001101554.1 hypothetical protein -
  WOC64_RS00090 (WOC64_00090) - 9499..10716 (+) 1218 WP_000270122.1 site-specific integrase -
  WOC64_RS00095 (WOC64_00095) - 10912..12084 (-) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  WOC64_RS00100 (WOC64_00100) - 12531..13361 (+) 831 Protein_19 KilA-N domain-containing protein -
  WOC64_RS00105 (WOC64_00105) rpsR 13543..13785 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  WOC64_RS00110 (WOC64_00110) ssbA 13837..14340 (-) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  WOC64_RS00115 (WOC64_00115) rpsF 14361..14657 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  WOC64_RS00120 (WOC64_00120) - 14901..15092 (+) 192 WP_001052483.1 hypothetical protein -
  WOC64_RS00125 (WOC64_00125) ychF 15178..16275 (-) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  WOC64_RS00130 (WOC64_00130) - 16287..16490 (-) 204 WP_000157345.1 DUF951 domain-containing protein -
  WOC64_RS00135 (WOC64_00135) - 16520..17401 (-) 882 WP_001077602.1 mechanosensitive ion channel family protein -
  WOC64_RS00140 (WOC64_00140) - 17558..18403 (-) 846 WP_001550052.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=972642 WOC64_RS00110 WP_000934799.1 13837..14340(-) (ssbA) [Staphylococcus aureus strain TUM20816]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=972642 WOC64_RS00110 WP_000934799.1 13837..14340(-) (ssbA) [Staphylococcus aureus strain TUM20816]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment