Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | WOC42_RS06430 | Genome accession | NZ_CP150786 |
| Coordinates | 1302080..1302583 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain TUM20817 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1281483..1306646 | 1302080..1302583 | within | 0 |
Gene organization within MGE regions
Location: 1281483..1306646
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WOC42_RS06275 (WOC42_06265) | - | 1281483..1281746 (+) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| WOC42_RS06280 (WOC42_06270) | - | 1281884..1282456 (-) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| WOC42_RS06285 (WOC42_06275) | - | 1282637..1283005 (-) | 369 | WP_108932421.1 | YxeA family protein | - |
| WOC42_RS06290 (WOC42_06280) | selX | 1283374..1283985 (-) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| WOC42_RS06295 (WOC42_06285) | - | 1284191..1284892 (+) | 702 | Protein_1231 | tyrosine-type recombinase/integrase | - |
| WOC42_RS06300 (WOC42_06290) | - | 1284931..1285869 (+) | 939 | WP_001822249.1 | Abi family protein | - |
| WOC42_RS06305 (WOC42_06295) | - | 1287008..1287193 (-) | 186 | WP_001286805.1 | hypothetical protein | - |
| WOC42_RS06310 (WOC42_06300) | - | 1287195..1287305 (-) | 111 | WP_000139423.1 | hypothetical protein | - |
| WOC42_RS06315 (WOC42_06305) | - | 1287376..1287528 (-) | 153 | WP_001795626.1 | hypothetical protein | - |
| WOC42_RS06320 (WOC42_06310) | - | 1287771..1287887 (-) | 117 | Protein_1236 | hypothetical protein | - |
| WOC42_RS06325 (WOC42_06315) | - | 1288376..1289344 (-) | 969 | WP_000801979.1 | Abi family protein | - |
| WOC42_RS06330 (WOC42_06325) | - | 1289621..1290190 (-) | 570 | WP_406818683.1 | terminase small subunit | - |
| WOC42_RS06335 (WOC42_06330) | - | 1290187..1290400 (-) | 214 | Protein_1239 | pathogenicity island family protein | - |
| WOC42_RS06340 (WOC42_06335) | - | 1290532..1291059 (-) | 528 | WP_000771356.1 | spore coat protein | - |
| WOC42_RS06345 (WOC42_06340) | - | 1291110..1291328 (-) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| WOC42_RS06350 (WOC42_06345) | - | 1291346..1291923 (-) | 578 | Protein_1242 | pathogenicity island protein | - |
| WOC42_RS06355 (WOC42_06350) | - | 1291935..1292276 (-) | 342 | WP_001161659.1 | hypothetical protein | - |
| WOC42_RS06360 (WOC42_06355) | - | 1292623..1293264 (-) | 642 | WP_001019769.1 | hypothetical protein | - |
| WOC42_RS06365 (WOC42_06360) | - | 1293261..1293545 (-) | 285 | WP_000998182.1 | hypothetical protein | - |
| WOC42_RS06370 (WOC42_06365) | - | 1293547..1293909 (-) | 363 | WP_108932420.1 | pathogenicity island protein | - |
| WOC42_RS06375 (WOC42_06370) | - | 1294195..1295664 (-) | 1470 | WP_001795628.1 | virulence-associated E family protein | - |
| WOC42_RS06380 (WOC42_06375) | - | 1295681..1296550 (-) | 870 | WP_001002700.1 | primase alpha helix C-terminal domain-containing protein | - |
| WOC42_RS06385 (WOC42_06380) | tscT | 1296614..1296931 (-) | 318 | WP_001103936.1 | type II toxin-antitoxin system toxin TscT | - |
| WOC42_RS06390 (WOC42_06385) | tscA | 1296934..1297143 (-) | 210 | WP_001058486.1 | type II toxin-antitoxin system antitoxin TscA | - |
| WOC42_RS06395 (WOC42_06390) | - | 1297136..1297282 (-) | 147 | WP_031824147.1 | hypothetical protein | - |
| WOC42_RS06400 (WOC42_06395) | - | 1297294..1297566 (-) | 273 | WP_000091734.1 | helix-turn-helix domain-containing protein | - |
| WOC42_RS06405 (WOC42_06400) | - | 1297567..1297779 (-) | 213 | WP_000794656.1 | helix-turn-helix transcriptional regulator | - |
| WOC42_RS06410 (WOC42_06405) | - | 1297923..1298618 (+) | 696 | WP_000668212.1 | helix-turn-helix domain-containing protein | - |
| WOC42_RS06415 (WOC42_06410) | - | 1299074..1300291 (+) | 1218 | WP_000270130.1 | site-specific integrase | - |
| WOC42_RS06420 (WOC42_06415) | - | 1300774..1301604 (+) | 831 | WP_000357934.1 | KilA-N domain-containing protein | - |
| WOC42_RS06425 (WOC42_06420) | rpsR | 1301786..1302028 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| WOC42_RS06430 (WOC42_06425) | ssbA | 1302080..1302583 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| WOC42_RS06435 (WOC42_06430) | rpsF | 1302604..1302900 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| WOC42_RS06440 (WOC42_06435) | - | 1303144..1303335 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| WOC42_RS06445 (WOC42_06440) | ychF | 1303421..1304518 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| WOC42_RS06450 (WOC42_06445) | - | 1304530..1304733 (-) | 204 | WP_000157345.1 | DUF951 domain-containing protein | - |
| WOC42_RS06455 (WOC42_06450) | - | 1304763..1305644 (-) | 882 | WP_001077602.1 | mechanosensitive ion channel family protein | - |
| WOC42_RS06460 (WOC42_06455) | - | 1305801..1306646 (-) | 846 | WP_001550052.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=972623 WOC42_RS06430 WP_000934799.1 1302080..1302583(-) (ssbA) [Staphylococcus aureus strain TUM20817]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=972623 WOC42_RS06430 WP_000934799.1 1302080..1302583(-) (ssbA) [Staphylococcus aureus strain TUM20817]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |