Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   AACJ17_RS05145 Genome accession   NZ_AP029010
Coordinates   1073187..1074260 (-) Length   357 a.a.
NCBI ID   WP_011000459.1    Uniprot ID   Q8Y236
Organism   Ralstonia pseudosolanacearum strain MAFF 301524     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1068187..1079260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACJ17_RS05110 (MAFF301524_10000) - 1068217..1068621 (+) 405 WP_011000453.1 polymer-forming cytoskeletal protein -
  AACJ17_RS05115 (MAFF301524_10010) erpA 1068750..1069124 (+) 375 WP_003265486.1 iron-sulfur cluster insertion protein ErpA -
  AACJ17_RS05120 (MAFF301524_10020) - 1069188..1070348 (-) 1161 WP_011000454.1 anhydro-N-acetylmuramic acid kinase -
  AACJ17_RS05125 (MAFF301524_10030) tyrS 1070523..1071794 (+) 1272 WP_016724018.1 tyrosine--tRNA ligase -
  AACJ17_RS05130 (MAFF301524_10040) dtd 1071791..1072291 (+) 501 WP_016724017.1 D-aminoacyl-tRNA deacylase -
  AACJ17_RS05135 (MAFF301524_10050) - 1072309..1072440 (+) 132 WP_016724016.1 hypothetical protein -
  AACJ17_RS05140 (MAFF301524_10060) - 1072440..1073123 (+) 684 WP_011000458.1 histidine phosphatase family protein -
  AACJ17_RS05145 (MAFF301524_10070) ruvB 1073187..1074260 (-) 1074 WP_011000459.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  AACJ17_RS05150 (MAFF301524_10080) ruvA 1074324..1074905 (-) 582 WP_016724015.1 Holliday junction branch migration protein RuvA -
  AACJ17_RS05155 (MAFF301524_10090) - 1074957..1076093 (-) 1137 WP_016724014.1 glycerophosphodiester phosphodiesterase -
  AACJ17_RS05160 (MAFF301524_10100) ruvC 1076188..1076733 (-) 546 WP_016726644.1 crossover junction endodeoxyribonuclease RuvC -
  AACJ17_RS05165 (MAFF301524_10110) purH 1076822..1078396 (-) 1575 WP_016726645.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  AACJ17_RS05170 (MAFF301524_10120) - 1078486..1078719 (-) 234 WP_011000464.1 Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 39058.85 Da        Isoelectric Point: 5.5347

>NTDB_id=97253 AACJ17_RS05145 WP_011000459.1 1073187..1074260(-) (ruvB) [Ralstonia pseudosolanacearum strain MAFF 301524]
MIETDKLAAKAVSAERLISASPASPNEEAFERALRPKLLDEYVGQEKVRGQLDIFMTAAKKRREALDHVLLFGPPGLGKT
TLAHIIAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVK
LDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPTELARIVTRSAGLLDARIAEDGALEIAKRSRGTPRIANRLLRR
VRDYAEVKADGVITRAVADAALAMLDVDAVGFDLMDRKLLEAILHKFNGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQG
YLQRTPRGRVATASAYQHFGLGAPKTGPARDLWDNNA

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=97253 AACJ17_RS05145 WP_011000459.1 1073187..1074260(-) (ruvB) [Ralstonia pseudosolanacearum strain MAFF 301524]
ATGATCGAAACCGACAAGCTCGCCGCCAAGGCCGTCTCCGCTGAACGCCTGATCTCGGCCTCGCCCGCCTCCCCCAACGA
GGAGGCATTCGAGCGCGCGCTGCGCCCCAAGCTGCTCGACGAATACGTCGGCCAGGAAAAGGTGCGCGGCCAGCTCGATA
TCTTCATGACGGCGGCCAAGAAGCGCCGCGAGGCGCTCGACCACGTGCTGCTGTTCGGCCCGCCGGGCCTGGGCAAGACG
ACGCTGGCGCACATCATCGCCCGCGAGATGGGCGTCAACCTGCGCCAGACCTCGGGCCCCGTGCTGGAGCGCCCAGGCGA
CCTGGCCGCGCTGCTGACCAACCTCGAAGCCAACGACGTCCTCTTCATCGACGAGATCCATCGACTCTCGCCGGTGGTGG
AGGAAATCCTGTATCCGGCGCTCGAGGACTACCAGATCGACATCATGATCGGCGAAGGCCCGGCAGCCCGCTCGGTCAAG
CTCGATCTGCAGCCGTTCACGCTGGTGGGCGCCACCACGCGCGCCGGCATGCTGACCAACCCGCTGCGCGACCGCTTCGG
CATCGTCGCCCGGCTCGAGTTCTATACGCCGACGGAGCTCGCGCGCATCGTCACGCGCTCTGCCGGCCTGCTCGACGCGC
GCATCGCCGAAGACGGCGCGCTGGAGATCGCCAAGCGCTCGCGCGGCACGCCCCGCATCGCCAACCGCCTGCTGCGCCGC
GTGCGCGACTACGCTGAAGTGAAAGCCGACGGCGTCATCACCCGCGCGGTGGCCGACGCGGCGCTGGCGATGCTCGACGT
GGATGCGGTCGGCTTCGACCTGATGGACCGCAAGCTGCTGGAAGCCATCCTGCACAAGTTCAACGGCGGCCCGGTCGGCA
TCGACAACCTGGCCGCCGCCATCGGCGAGGAGCGCGACACCATCGAAGACGTGCTCGAGCCCTACCTGATCCAGCAGGGC
TACCTGCAGCGCACGCCGCGCGGGCGCGTCGCCACGGCATCGGCCTACCAGCACTTCGGGCTGGGCGCGCCGAAGACCGG
TCCGGCGCGCGACCTGTGGGACAACAACGCCTAG

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(34-192)

RuvB AAA lid domain (AAA_lid_4)

(195-268)

RuvB C-terminal winged helix domain (WHD_RuvB)

(270-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y236

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

62.538

92.717

0.58
  ruvB Streptococcus pneumoniae TIGR4

60.635

88.235

0.535
  ruvB Streptococcus pneumoniae R6

60.635

88.235

0.535
  ruvB Streptococcus pneumoniae D39

60.635

88.235

0.535
  ruvB Synechocystis sp. PCC 6803

51.895

96.078

0.499
  ruvB Helicobacter pylori 26695

55.7

85.994

0.479

Multiple sequence alignment