Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | WOC56_RS05650 | Genome accession | NZ_CP150779 |
| Coordinates | 1148041..1148544 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain TUM20823 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1148041..1169141 | 1148041..1148544 | within | 0 |
Gene organization within MGE regions
Location: 1148041..1169141
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WOC56_RS05650 (WOC56_05660) | ssbA | 1148041..1148544 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| WOC56_RS05655 (WOC56_05665) | rpsR | 1148596..1148838 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| WOC56_RS05660 (WOC56_05670) | - | 1149020..1149850 (-) | 831 | WP_000357934.1 | KilA-N domain-containing protein | - |
| WOC56_RS05665 (WOC56_05675) | - | 1150333..1151550 (-) | 1218 | WP_000270130.1 | site-specific integrase | - |
| WOC56_RS05670 (WOC56_05680) | - | 1152006..1152701 (-) | 696 | WP_000668212.1 | helix-turn-helix domain-containing protein | - |
| WOC56_RS05675 (WOC56_05685) | - | 1152845..1153057 (+) | 213 | WP_000794656.1 | helix-turn-helix transcriptional regulator | - |
| WOC56_RS05680 (WOC56_05690) | - | 1153058..1153330 (+) | 273 | WP_000091734.1 | helix-turn-helix domain-containing protein | - |
| WOC56_RS05685 (WOC56_05695) | - | 1153342..1153488 (+) | 147 | WP_031824147.1 | hypothetical protein | - |
| WOC56_RS05690 (WOC56_05700) | tscA | 1153481..1153690 (+) | 210 | WP_001058486.1 | type II toxin-antitoxin system antitoxin TscA | - |
| WOC56_RS05695 (WOC56_05705) | tscT | 1153693..1154010 (+) | 318 | WP_001103936.1 | type II toxin-antitoxin system toxin TscT | - |
| WOC56_RS05700 (WOC56_05710) | - | 1154074..1154943 (+) | 870 | WP_001002700.1 | primase alpha helix C-terminal domain-containing protein | - |
| WOC56_RS05705 (WOC56_05715) | - | 1154960..1156429 (+) | 1470 | WP_001795628.1 | virulence-associated E family protein | - |
| WOC56_RS05710 (WOC56_05720) | - | 1156715..1157077 (+) | 363 | WP_108932420.1 | pathogenicity island protein | - |
| WOC56_RS05715 (WOC56_05725) | - | 1157079..1157363 (+) | 285 | WP_000998182.1 | hypothetical protein | - |
| WOC56_RS05720 (WOC56_05730) | - | 1157360..1158001 (+) | 642 | WP_001019769.1 | hypothetical protein | - |
| WOC56_RS05725 (WOC56_05735) | - | 1158348..1158689 (+) | 342 | WP_001161659.1 | hypothetical protein | - |
| WOC56_RS05730 (WOC56_05740) | - | 1158701..1159279 (+) | 579 | WP_000846292.1 | hypothetical protein | - |
| WOC56_RS05735 (WOC56_05745) | - | 1159297..1159515 (+) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| WOC56_RS05740 (WOC56_05750) | - | 1159566..1160093 (+) | 528 | WP_000771356.1 | spore coat protein | - |
| WOC56_RS05745 (WOC56_05755) | - | 1160096..1160437 (+) | 342 | WP_000358778.1 | hypothetical protein | - |
| WOC56_RS05750 (WOC56_05760) | - | 1160434..1161003 (+) | 570 | WP_001293080.1 | terminase small subunit | - |
| WOC56_RS05755 (WOC56_05770) | - | 1161280..1162248 (+) | 969 | WP_000801979.1 | Abi family protein | - |
| WOC56_RS05760 (WOC56_05775) | - | 1162737..1162853 (+) | 117 | Protein_1135 | hypothetical protein | - |
| WOC56_RS05765 (WOC56_05780) | - | 1163096..1163248 (+) | 153 | WP_001795626.1 | hypothetical protein | - |
| WOC56_RS05770 (WOC56_05785) | - | 1163319..1163429 (+) | 111 | WP_000139423.1 | hypothetical protein | - |
| WOC56_RS05775 (WOC56_05790) | - | 1163431..1163616 (+) | 186 | WP_001286805.1 | hypothetical protein | - |
| WOC56_RS05780 (WOC56_05795) | - | 1164755..1165693 (-) | 939 | WP_001822249.1 | Abi family protein | - |
| WOC56_RS05785 (WOC56_05800) | - | 1165732..1166433 (-) | 702 | Protein_1140 | tyrosine-type recombinase/integrase | - |
| WOC56_RS05790 (WOC56_05805) | selX | 1166639..1167250 (+) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| WOC56_RS05795 (WOC56_05810) | - | 1167619..1167987 (+) | 369 | WP_108932421.1 | YxeA family protein | - |
| WOC56_RS05800 (WOC56_05815) | - | 1168168..1168740 (+) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| WOC56_RS05805 (WOC56_05820) | - | 1168878..1169141 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=972477 WOC56_RS05650 WP_000934799.1 1148041..1148544(+) (ssbA) [Staphylococcus aureus strain TUM20823]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=972477 WOC56_RS05650 WP_000934799.1 1148041..1148544(+) (ssbA) [Staphylococcus aureus strain TUM20823]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |