Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | WOC60_RS02010 | Genome accession | NZ_CP150771 |
| Coordinates | 434575..435078 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain TUM20914 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 435554..456227 | 434575..435078 | flank | 476 |
Gene organization within MGE regions
Location: 434575..456227
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WOC60_RS02010 (WOC60_02015) | ssbA | 434575..435078 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| WOC60_RS02015 (WOC60_02020) | rpsR | 435130..435372 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| WOC60_RS02020 (WOC60_02025) | - | 435554..436384 (-) | 831 | WP_000357934.1 | KilA-N domain-containing protein | - |
| WOC60_RS02025 (WOC60_02030) | - | 436867..438084 (-) | 1218 | WP_000270130.1 | site-specific integrase | - |
| WOC60_RS02030 (WOC60_02035) | - | 438540..439235 (-) | 696 | WP_000668212.1 | helix-turn-helix domain-containing protein | - |
| WOC60_RS02035 (WOC60_02040) | - | 439379..439591 (+) | 213 | WP_000794656.1 | helix-turn-helix transcriptional regulator | - |
| WOC60_RS02040 (WOC60_02045) | - | 439592..439864 (+) | 273 | WP_000091734.1 | helix-turn-helix domain-containing protein | - |
| WOC60_RS02045 (WOC60_02050) | - | 439876..440022 (+) | 147 | WP_031824147.1 | hypothetical protein | - |
| WOC60_RS02050 (WOC60_02055) | tscA | 440015..440224 (+) | 210 | WP_001058486.1 | type II toxin-antitoxin system antitoxin TscA | - |
| WOC60_RS02055 (WOC60_02060) | tscT | 440227..440544 (+) | 318 | WP_001103936.1 | type II toxin-antitoxin system toxin TscT | - |
| WOC60_RS02060 (WOC60_02065) | - | 440608..441477 (+) | 870 | WP_001002700.1 | primase alpha helix C-terminal domain-containing protein | - |
| WOC60_RS02065 (WOC60_02070) | - | 441494..442963 (+) | 1470 | WP_001795628.1 | virulence-associated E family protein | - |
| WOC60_RS02070 (WOC60_02075) | - | 443249..443611 (+) | 363 | WP_108932420.1 | pathogenicity island protein | - |
| WOC60_RS02075 (WOC60_02080) | - | 443613..443897 (+) | 285 | WP_000998182.1 | hypothetical protein | - |
| WOC60_RS02080 (WOC60_02085) | - | 443894..444535 (+) | 642 | WP_001019769.1 | hypothetical protein | - |
| WOC60_RS02085 (WOC60_02090) | - | 444882..445223 (+) | 342 | WP_001161659.1 | hypothetical protein | - |
| WOC60_RS02090 (WOC60_02095) | - | 445235..445813 (+) | 579 | WP_000846292.1 | hypothetical protein | - |
| WOC60_RS02095 (WOC60_02100) | - | 445831..446049 (+) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| WOC60_RS02100 (WOC60_02105) | - | 446100..446627 (+) | 528 | WP_000771356.1 | spore coat protein | - |
| WOC60_RS02105 (WOC60_02110) | - | 446759..446972 (+) | 214 | Protein_418 | pathogenicity island family protein | - |
| WOC60_RS02110 (WOC60_02115) | - | 446969..447538 (+) | 570 | WP_406818708.1 | terminase small subunit | - |
| WOC60_RS02115 (WOC60_02125) | - | 447815..448783 (+) | 969 | WP_000801979.1 | Abi family protein | - |
| WOC60_RS02120 (WOC60_02130) | - | 449272..449388 (+) | 117 | Protein_421 | hypothetical protein | - |
| WOC60_RS02125 (WOC60_02135) | - | 449631..449783 (+) | 153 | WP_001795626.1 | hypothetical protein | - |
| WOC60_RS02130 (WOC60_02140) | - | 449854..449964 (+) | 111 | WP_000139423.1 | hypothetical protein | - |
| WOC60_RS02135 (WOC60_02145) | - | 449966..450151 (+) | 186 | WP_001286805.1 | hypothetical protein | - |
| WOC60_RS02140 (WOC60_02150) | - | 451290..452228 (-) | 939 | WP_001822249.1 | Abi family protein | - |
| WOC60_RS02145 (WOC60_02155) | - | 452267..452968 (-) | 702 | Protein_426 | tyrosine-type recombinase/integrase | - |
| WOC60_RS02150 (WOC60_02160) | selX | 453174..453785 (+) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| WOC60_RS02155 (WOC60_02165) | - | 454154..454522 (+) | 369 | WP_108932421.1 | YxeA family protein | - |
| WOC60_RS02160 (WOC60_02170) | - | 454703..455275 (+) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| WOC60_RS02165 (WOC60_02175) | - | 455413..455676 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| WOC60_RS02170 (WOC60_02180) | - | 455976..456227 (+) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=972295 WOC60_RS02010 WP_000934799.1 434575..435078(+) (ssbA) [Staphylococcus aureus strain TUM20914]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=972295 WOC60_RS02010 WP_000934799.1 434575..435078(+) (ssbA) [Staphylococcus aureus strain TUM20914]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |