Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   WOC54_RS00030 Genome accession   NZ_CP150747
Coordinates   2186..2656 (-) Length   156 a.a.
NCBI ID   WP_125571269.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM22701     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 5..19204 2186..2656 within 0


Gene organization within MGE regions


Location: 5..19204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOC54_RS00005 (WOC54_00005) - 5..248 (-) 244 Protein_0 phi PVL orf 51-like protein -
  WOC54_RS00010 (WOC54_00010) - 238..621 (-) 384 WP_406822331.1 SA1788 family PVL leukocidin-associated protein -
  WOC54_RS00015 (WOC54_00015) - 634..1038 (-) 405 WP_000401972.1 RusA family crossover junction endodeoxyribonuclease -
  WOC54_RS00020 (WOC54_00020) - 1047..1265 (-) 219 WP_000338528.1 hypothetical protein -
  WOC54_RS00025 (WOC54_00025) - 1272..2156 (-) 885 WP_031873996.1 DnaD domain protein -
  WOC54_RS00030 (WOC54_00030) ssbA 2186..2656 (-) 471 WP_125571269.1 single-stranded DNA-binding protein Machinery gene
  WOC54_RS00035 (WOC54_00035) - 2657..3274 (-) 618 WP_071621397.1 MBL fold metallo-hydrolase -
  WOC54_RS00040 (WOC54_00040) - 3355..4275 (-) 921 WP_000138481.1 recombinase RecT -
  WOC54_RS00045 (WOC54_00045) - 4277..6220 (-) 1944 WP_031788695.1 AAA family ATPase -
  WOC54_RS00050 (WOC54_00050) - 6229..6492 (-) 264 WP_001205732.1 hypothetical protein -
  WOC54_RS00055 (WOC54_00055) - 6501..6761 (-) 261 WP_000291489.1 DUF1108 family protein -
  WOC54_RS00060 (WOC54_00060) - 6856..7017 (-) 162 WP_341262162.1 DUF1270 family protein -
  WOC54_RS00065 (WOC54_00065) - 7010..7138 (-) 129 WP_001559112.1 hypothetical protein -
  WOC54_RS00070 (WOC54_00070) - 7197..7427 (+) 231 WP_341262163.1 hypothetical protein -
  WOC54_RS00075 (WOC54_00075) - 7402..7578 (-) 177 WP_001094935.1 hypothetical protein -
  WOC54_RS00080 (WOC54_00080) - 7594..8346 (-) 753 WP_023487064.1 phage antirepressor KilAC domain-containing protein -
  WOC54_RS00085 (WOC54_00085) - 8348..8533 (-) 186 WP_000933363.1 helix-turn-helix domain-containing protein -
  WOC54_RS00090 (WOC54_00090) - 8973..9182 (+) 210 WP_000642492.1 hypothetical protein -
  WOC54_RS00095 (WOC54_00095) - 9172..9315 (-) 144 WP_000939498.1 hypothetical protein -
  WOC54_RS00100 (WOC54_00100) - 9330..9773 (-) 444 WP_023487065.1 hypothetical protein -
  WOC54_RS00105 (WOC54_00105) - 9786..10034 (-) 249 WP_341262164.1 helix-turn-helix transcriptional regulator -
  WOC54_RS00110 (WOC54_00110) - 10198..10521 (+) 324 WP_001260487.1 helix-turn-helix domain-containing protein -
  WOC54_RS00115 (WOC54_00115) - 10534..10995 (+) 462 WP_000525009.1 hypothetical protein -
  WOC54_RS00120 (WOC54_00120) - 11013..11738 (+) 726 WP_000661437.1 PH domain-containing protein -
  WOC54_RS00125 (WOC54_00125) - 11770..12450 (+) 681 WP_000392109.1 type II toxin-antitoxin system PemK/MazF family toxin -
  WOC54_RS00130 (WOC54_00130) - 12657..14042 (+) 1386 WP_196581100.1 recombinase family protein -
  WOC54_RS00135 (WOC54_00135) rpmF 14159..14332 (-) 174 WP_000290472.1 50S ribosomal protein L32 -
  WOC54_RS00140 (WOC54_00140) - 14412..14969 (-) 558 WP_000872158.1 DUF177 domain-containing protein -
  WOC54_RS00145 (WOC54_00145) - 15096..16235 (+) 1140 WP_000843611.1 nucleotidyltransferase -
  WOC54_RS00150 (WOC54_00150) coaD 16297..16779 (-) 483 WP_000401377.1 pantetheine-phosphate adenylyltransferase -
  WOC54_RS00155 (WOC54_00155) rsmD 16781..17323 (-) 543 WP_001263796.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  WOC54_RS00160 (WOC54_00160) - 17393..17782 (+) 390 WP_000814565.1 hypothetical protein -
  WOC54_RS00165 (WOC54_00165) - 17785..18039 (-) 255 WP_001049150.1 YlbG family protein -
  WOC54_RS00170 (WOC54_00170) - 18278..19204 (+) 927 WP_000757575.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17595.36 Da        Isoelectric Point: 4.9327

>NTDB_id=971682 WOC54_RS00030 WP_125571269.1 2186..2656(-) (ssbA) [Staphylococcus aureus strain TUM22701]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFVNCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNTNDSQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=971682 WOC54_RS00030 WP_125571269.1 2186..2656(-) (ssbA) [Staphylococcus aureus strain TUM22701]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCTTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTGTTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.452

100

0.686
  ssb Latilactobacillus sakei subsp. sakei 23K

51.765

100

0.564
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365

Multiple sequence alignment