Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   AACJ92_RS16110 Genome accession   NZ_AP029006
Coordinates   3408639..3409712 (+) Length   357 a.a.
NCBI ID   WP_011000459.1    Uniprot ID   Q8Y236
Organism   Ralstonia pseudosolanacearum strain MAFF 211520     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3403639..3414712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACJ92_RS16085 (MAFF211520_31550) - 3404180..3404413 (+) 234 WP_011000464.1 Fis family transcriptional regulator -
  AACJ92_RS16090 (MAFF211520_31560) purH 3404503..3406077 (+) 1575 WP_016726645.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  AACJ92_RS16095 (MAFF211520_31570) ruvC 3406166..3406711 (+) 546 WP_016726644.1 crossover junction endodeoxyribonuclease RuvC -
  AACJ92_RS16100 (MAFF211520_31580) - 3406806..3407942 (+) 1137 WP_016724014.1 glycerophosphodiester phosphodiesterase -
  AACJ92_RS16105 (MAFF211520_31590) ruvA 3407994..3408575 (+) 582 WP_016724015.1 Holliday junction branch migration protein RuvA -
  AACJ92_RS16110 (MAFF211520_31600) ruvB 3408639..3409712 (+) 1074 WP_011000459.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  AACJ92_RS16115 (MAFF211520_31610) - 3409776..3410459 (-) 684 WP_011000458.1 histidine phosphatase family protein -
  AACJ92_RS16120 (MAFF211520_31620) - 3410459..3410590 (-) 132 WP_016724016.1 hypothetical protein -
  AACJ92_RS16125 (MAFF211520_31630) dtd 3410608..3411108 (-) 501 WP_016724017.1 D-aminoacyl-tRNA deacylase -
  AACJ92_RS16130 (MAFF211520_31640) tyrS 3411105..3412376 (-) 1272 WP_016724018.1 tyrosine--tRNA ligase -
  AACJ92_RS16135 (MAFF211520_31650) - 3412551..3413711 (+) 1161 WP_011000454.1 anhydro-N-acetylmuramic acid kinase -
  AACJ92_RS16140 (MAFF211520_31660) erpA 3413775..3414149 (-) 375 WP_003265486.1 iron-sulfur cluster insertion protein ErpA -
  AACJ92_RS16145 (MAFF211520_31670) - 3414278..3414682 (-) 405 WP_011000453.1 polymer-forming cytoskeletal protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 39058.85 Da        Isoelectric Point: 5.5347

>NTDB_id=97159 AACJ92_RS16110 WP_011000459.1 3408639..3409712(+) (ruvB) [Ralstonia pseudosolanacearum strain MAFF 211520]
MIETDKLAAKAVSAERLISASPASPNEEAFERALRPKLLDEYVGQEKVRGQLDIFMTAAKKRREALDHVLLFGPPGLGKT
TLAHIIAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVK
LDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPTELARIVTRSAGLLDARIAEDGALEIAKRSRGTPRIANRLLRR
VRDYAEVKADGVITRAVADAALAMLDVDAVGFDLMDRKLLEAILHKFNGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQG
YLQRTPRGRVATASAYQHFGLGAPKTGPARDLWDNNA

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=97159 AACJ92_RS16110 WP_011000459.1 3408639..3409712(+) (ruvB) [Ralstonia pseudosolanacearum strain MAFF 211520]
ATGATCGAAACCGACAAGCTCGCCGCCAAGGCCGTCTCCGCTGAACGCCTGATCTCGGCCTCGCCCGCCTCCCCCAACGA
GGAGGCATTCGAGCGCGCGCTGCGCCCCAAGCTGCTCGACGAATACGTCGGCCAGGAAAAGGTGCGCGGCCAGCTCGATA
TCTTCATGACGGCGGCCAAGAAGCGCCGCGAGGCGCTCGACCACGTGCTGCTGTTCGGCCCGCCGGGCCTGGGCAAGACG
ACGCTGGCGCACATCATCGCCCGCGAGATGGGCGTCAACCTGCGCCAGACCTCGGGCCCCGTGCTGGAGCGCCCAGGCGA
CCTGGCCGCGCTGCTGACCAACCTCGAAGCCAACGACGTCCTCTTCATCGACGAGATCCATCGACTCTCGCCGGTGGTGG
AGGAAATCCTGTATCCGGCGCTCGAGGACTACCAGATCGACATCATGATCGGCGAAGGCCCGGCAGCCCGCTCGGTCAAG
CTCGATCTGCAGCCGTTCACGCTGGTGGGCGCCACCACGCGCGCCGGCATGCTGACCAACCCGCTGCGCGACCGCTTCGG
CATCGTCGCCCGGCTCGAGTTCTATACGCCGACGGAGCTCGCGCGCATCGTCACGCGCTCTGCCGGCCTGCTCGACGCGC
GCATCGCCGAAGACGGCGCGCTGGAGATCGCCAAGCGCTCGCGCGGCACGCCCCGCATCGCCAACCGCCTGCTGCGCCGC
GTGCGCGACTACGCTGAAGTGAAAGCCGACGGCGTCATCACCCGCGCGGTGGCCGACGCGGCGCTGGCGATGCTCGACGT
GGATGCGGTCGGCTTCGACCTGATGGACCGCAAGCTGCTGGAAGCCATCCTGCACAAGTTCAACGGCGGCCCGGTCGGCA
TCGACAACCTGGCCGCCGCCATCGGCGAGGAGCGCGACACCATCGAAGACGTGCTCGAGCCCTACCTGATCCAGCAGGGC
TACCTGCAGCGCACGCCGCGCGGGCGCGTCGCCACGGCATCGGCCTACCAGCACTTCGGGCTGGGCGCGCCGAAGACCGG
TCCGGCGCGCGACCTGTGGGACAACAACGCCTAG

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(34-192)

RuvB AAA lid domain (AAA_lid_4)

(195-268)

RuvB C-terminal winged helix domain (WHD_RuvB)

(270-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y236

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

62.538

92.717

0.58
  ruvB Streptococcus pneumoniae TIGR4

60.635

88.235

0.535
  ruvB Streptococcus pneumoniae R6

60.635

88.235

0.535
  ruvB Streptococcus pneumoniae D39

60.635

88.235

0.535
  ruvB Synechocystis sp. PCC 6803

51.895

96.078

0.499
  ruvB Helicobacter pylori 26695

55.7

85.994

0.479

Multiple sequence alignment