Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | WOC44_RS10300 | Genome accession | NZ_CP150737 |
| Coordinates | 2019852..2020355 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain TUM22723 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2018025..2050305 | 2019852..2020355 | within | 0 |
Gene organization within MGE regions
Location: 2018025..2050305
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WOC44_RS10290 (WOC44_10290) | - | 2018354..2019292 (+) | 939 | WP_001822249.1 | Abi family protein | - |
| WOC44_RS10295 (WOC44_10295) | rpsR | 2019558..2019800 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| WOC44_RS10300 (WOC44_10300) | ssbA | 2019852..2020355 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| WOC44_RS10305 (WOC44_10305) | rpsF | 2020376..2020672 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| WOC44_RS10310 (WOC44_10310) | - | 2020841..2021125 (+) | 285 | WP_001553897.1 | hypothetical protein | - |
| WOC44_RS10315 (WOC44_10315) | - | 2021282..2021584 (+) | 303 | WP_001553895.1 | hypothetical protein | - |
| WOC44_RS10320 (WOC44_10320) | - | 2021627..2021962 (+) | 336 | WP_001553893.1 | DUF961 family protein | - |
| WOC44_RS10325 (WOC44_10325) | - | 2021966..2022268 (+) | 303 | WP_341270885.1 | hypothetical protein | - |
| WOC44_RS10330 (WOC44_10330) | - | 2022458..2023525 (+) | 1068 | WP_341270886.1 | replication initiation factor domain-containing protein | - |
| WOC44_RS10335 (WOC44_10335) | - | 2023611..2024672 (+) | 1062 | WP_031904062.1 | conjugal transfer protein | - |
| WOC44_RS10340 (WOC44_10340) | - | 2024677..2024937 (+) | 261 | WP_001553885.1 | TcpD family membrane protein | - |
| WOC44_RS10345 (WOC44_10345) | - | 2024943..2025332 (+) | 390 | WP_031904063.1 | TcpE family conjugal transfer membrane protein | - |
| WOC44_RS10350 (WOC44_10350) | - | 2025367..2027862 (+) | 2496 | WP_001553882.1 | ATP-binding protein | - |
| WOC44_RS10355 (WOC44_10355) | - | 2028095..2029453 (+) | 1359 | WP_001553878.1 | FtsK/SpoIIIE domain-containing protein | - |
| WOC44_RS10360 (WOC44_10360) | - | 2029460..2029627 (+) | 168 | WP_001553877.1 | hypothetical protein | - |
| WOC44_RS10365 (WOC44_10365) | - | 2029643..2031559 (+) | 1917 | WP_001553875.1 | hypothetical protein | - |
| WOC44_RS10370 (WOC44_10370) | - | 2031549..2032586 (+) | 1038 | WP_001553872.1 | CHAP domain-containing protein | - |
| WOC44_RS10375 (WOC44_10375) | - | 2032593..2033186 (+) | 594 | WP_031904065.1 | hypothetical protein | - |
| WOC44_RS10380 (WOC44_10380) | - | 2033234..2033596 (+) | 363 | WP_031904066.1 | cystatin-like fold lipoprotein | - |
| WOC44_RS10385 (WOC44_10385) | - | 2033708..2034238 (+) | 531 | WP_108957673.1 | helix-turn-helix domain-containing protein | - |
| WOC44_RS10390 (WOC44_10390) | - | 2034267..2034692 (+) | 426 | WP_232051005.1 | IS30 family transposase | - |
| WOC44_RS10395 (WOC44_10395) | - | 2035117..2035308 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| WOC44_RS10400 (WOC44_10400) | ychF | 2035394..2036491 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| WOC44_RS10405 (WOC44_10405) | - | 2036503..2036706 (-) | 204 | WP_000157345.1 | DUF951 domain-containing protein | - |
| WOC44_RS10410 (WOC44_10410) | - | 2036736..2037617 (-) | 882 | WP_001077602.1 | mechanosensitive ion channel family protein | - |
| WOC44_RS10415 (WOC44_10415) | - | 2037774..2038619 (-) | 846 | WP_001550052.1 | ParB/RepB/Spo0J family partition protein | - |
| WOC44_RS10420 (WOC44_10420) | - | 2039283..2040386 (+) | 1104 | Protein_2007 | PLP-dependent transferase | - |
| WOC44_RS10425 (WOC44_10425) | metC | 2040383..2041543 (+) | 1161 | WP_000175846.1 | cystathionine beta-lyase MetC | - |
| WOC44_RS10430 (WOC44_10430) | - | 2041512..2043353 (+) | 1842 | WP_000077318.1 | bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase | - |
| WOC44_RS10435 (WOC44_10435) | metE | 2043350..2045578 (+) | 2229 | WP_000207614.1 | 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase | - |
| WOC44_RS10440 (WOC44_10440) | - | 2045621..2046373 (+) | 753 | WP_000195907.1 | cyclase family protein | - |
| WOC44_RS10445 (WOC44_10445) | - | 2046456..2047637 (-) | 1182 | WP_000199070.1 | acetyl-CoA C-acetyltransferase | - |
| WOC44_RS10450 (WOC44_10450) | - | 2048176..2049309 (+) | 1134 | WP_000245700.1 | low temperature requirement protein A | - |
| WOC44_RS10455 (WOC44_10455) | - | 2049676..2050305 (-) | 630 | WP_000677714.1 | ABC-2 transporter permease | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=971496 WOC44_RS10300 WP_000934799.1 2019852..2020355(-) (ssbA) [Staphylococcus aureus strain TUM22723]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=971496 WOC44_RS10300 WP_000934799.1 2019852..2020355(-) (ssbA) [Staphylococcus aureus strain TUM22723]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCCGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCCGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |