Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | ACJX2R_RS40400 | Genome accession | NZ_CP178360 |
| Coordinates | 9509479..9510567 (+) | Length | 362 a.a. |
| NCBI ID | WP_262700936.1 | Uniprot ID | - |
| Organism | Streptomyces sp. Inha503 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 9504479..9515567
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACJX2R_RS40370 (ACJX2R_40445) | - | 9504680..9505237 (+) | 558 | WP_262700932.1 | hypothetical protein | - |
| ACJX2R_RS40375 (ACJX2R_40450) | pdxS | 9505465..9506385 (+) | 921 | WP_413104111.1 | pyridoxal 5'-phosphate synthase lyase subunit PdxS | - |
| ACJX2R_RS40380 (ACJX2R_40455) | pdxT | 9506476..9507096 (+) | 621 | WP_413104112.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT | - |
| ACJX2R_RS40385 (ACJX2R_40460) | - | 9507257..9508009 (+) | 753 | WP_020867089.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| ACJX2R_RS40390 (ACJX2R_40465) | ruvC | 9508171..9508794 (+) | 624 | WP_413104113.1 | crossover junction endodeoxyribonuclease RuvC | - |
| ACJX2R_RS40395 (ACJX2R_40470) | ruvA | 9508791..9509411 (+) | 621 | WP_413104114.1 | Holliday junction branch migration protein RuvA | - |
| ACJX2R_RS40400 (ACJX2R_40475) | ruvB | 9509479..9510567 (+) | 1089 | WP_262700936.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| ACJX2R_RS40405 (ACJX2R_40480) | yajC | 9510841..9511389 (+) | 549 | WP_413104115.1 | preprotein translocase subunit YajC | - |
| ACJX2R_RS40410 (ACJX2R_40485) | secD | 9511541..9513337 (+) | 1797 | WP_413104116.1 | protein translocase subunit SecD | - |
| ACJX2R_RS40415 (ACJX2R_40490) | secF | 9513339..9514457 (+) | 1119 | WP_413104117.1 | protein translocase subunit SecF | - |
| ACJX2R_RS40420 (ACJX2R_40495) | - | 9514475..9515071 (+) | 597 | WP_413104118.1 | adenine phosphoribosyltransferase | - |
Sequence
Protein
Download Length: 362 a.a. Molecular weight: 38266.59 Da Isoelectric Point: 4.7454
>NTDB_id=971464 ACJX2R_RS40400 WP_262700936.1 9509479..9510567(+) (ruvB) [Streptomyces sp. Inha503]
MNWDETPPATADDAPSGAGGRLVGADADGDDQAVEAALRPKDLGEFVGQERVREQLDLVLKAARQRGGTADHVLLSGAPG
LGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLTEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGA
TAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPAELERVIHRSAGLLDVTIDPEGASEIAGRSRGTPRISNR
LLRRVRDYAQVKADGVITREIAASALAVYDVDERGLDRLDRAVLSALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFL
VREGLLARTPRGRIGTPAAWAHMGLTPPPQTAAGGQAGLFET
MNWDETPPATADDAPSGAGGRLVGADADGDDQAVEAALRPKDLGEFVGQERVREQLDLVLKAARQRGGTADHVLLSGAPG
LGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLTEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGA
TAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPAELERVIHRSAGLLDVTIDPEGASEIAGRSRGTPRISNR
LLRRVRDYAQVKADGVITREIAASALAVYDVDERGLDRLDRAVLSALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFL
VREGLLARTPRGRIGTPAAWAHMGLTPPPQTAAGGQAGLFET
Nucleotide
Download Length: 1089 bp
>NTDB_id=971464 ACJX2R_RS40400 WP_262700936.1 9509479..9510567(+) (ruvB) [Streptomyces sp. Inha503]
GTGAACTGGGACGAGACCCCTCCGGCCACCGCCGACGACGCCCCGTCCGGCGCGGGCGGCCGGCTGGTGGGCGCCGACGC
GGACGGCGACGACCAGGCGGTGGAGGCCGCGCTGCGCCCCAAGGACCTCGGCGAGTTCGTCGGCCAGGAGCGGGTCCGCG
AGCAGCTGGACCTGGTGCTCAAGGCGGCCCGGCAGCGCGGCGGCACCGCCGACCATGTGCTGCTCTCCGGCGCGCCCGGA
CTGGGCAAGACCACCCTCTCCATGATCATCGCCGCCGAGATGGGCGCCCCGATCCGGATCACCTCCGGCCCCGCCATCCA
GCACGCCGGCGATCTGGCCGCGATCCTCTCCTCCCTCACCGAGGGCGAGGTGCTCTTCCTCGACGAGATCCACCGGATGT
CCCGGCCCGCCGAGGAGATGCTCTACATGGCGATGGAGGACTTCCGCGTCGACGTCATCGTCGGCAAGGGGCCCGGGGCC
ACCGCCATCCCGCTGGAGTTGCCGCCGTTCACGCTGGTCGGCGCCACCACCCGGGCCGGGCTGCTGCCGCCCCCGCTGCG
CGACCGGTTCGGCTTCACCGGCCATATGGAGTTCTACGCCCCGGCCGAGCTGGAGCGGGTCATCCACCGTTCCGCCGGGC
TGCTCGACGTGACCATCGATCCCGAGGGGGCGTCCGAGATCGCGGGCCGCTCCCGCGGCACCCCCCGGATCTCCAACCGG
CTGCTGCGCCGGGTGCGCGACTACGCCCAGGTCAAGGCGGACGGGGTGATCACCCGCGAGATCGCCGCCAGCGCCCTGGC
CGTCTACGACGTGGACGAGCGCGGTCTGGACCGGCTGGACCGGGCGGTGCTCAGCGCCCTGCTCAAGCTGTTCGGCGGCG
GGCCGGTGGGCCTGTCGACCCTGGCGGTCGCGGTGGGGGAGGAGCGTGAGACGGTGGAGGAGGTCGCCGAGCCCTTCCTG
GTCCGGGAGGGGCTGCTGGCCCGTACCCCCCGGGGGCGGATCGGTACCCCGGCGGCCTGGGCGCATATGGGGCTCACCCC
ACCGCCGCAGACCGCCGCCGGTGGTCAGGCGGGCCTCTTCGAGACATGA
GTGAACTGGGACGAGACCCCTCCGGCCACCGCCGACGACGCCCCGTCCGGCGCGGGCGGCCGGCTGGTGGGCGCCGACGC
GGACGGCGACGACCAGGCGGTGGAGGCCGCGCTGCGCCCCAAGGACCTCGGCGAGTTCGTCGGCCAGGAGCGGGTCCGCG
AGCAGCTGGACCTGGTGCTCAAGGCGGCCCGGCAGCGCGGCGGCACCGCCGACCATGTGCTGCTCTCCGGCGCGCCCGGA
CTGGGCAAGACCACCCTCTCCATGATCATCGCCGCCGAGATGGGCGCCCCGATCCGGATCACCTCCGGCCCCGCCATCCA
GCACGCCGGCGATCTGGCCGCGATCCTCTCCTCCCTCACCGAGGGCGAGGTGCTCTTCCTCGACGAGATCCACCGGATGT
CCCGGCCCGCCGAGGAGATGCTCTACATGGCGATGGAGGACTTCCGCGTCGACGTCATCGTCGGCAAGGGGCCCGGGGCC
ACCGCCATCCCGCTGGAGTTGCCGCCGTTCACGCTGGTCGGCGCCACCACCCGGGCCGGGCTGCTGCCGCCCCCGCTGCG
CGACCGGTTCGGCTTCACCGGCCATATGGAGTTCTACGCCCCGGCCGAGCTGGAGCGGGTCATCCACCGTTCCGCCGGGC
TGCTCGACGTGACCATCGATCCCGAGGGGGCGTCCGAGATCGCGGGCCGCTCCCGCGGCACCCCCCGGATCTCCAACCGG
CTGCTGCGCCGGGTGCGCGACTACGCCCAGGTCAAGGCGGACGGGGTGATCACCCGCGAGATCGCCGCCAGCGCCCTGGC
CGTCTACGACGTGGACGAGCGCGGTCTGGACCGGCTGGACCGGGCGGTGCTCAGCGCCCTGCTCAAGCTGTTCGGCGGCG
GGCCGGTGGGCCTGTCGACCCTGGCGGTCGCGGTGGGGGAGGAGCGTGAGACGGTGGAGGAGGTCGCCGAGCCCTTCCTG
GTCCGGGAGGGGCTGCTGGCCCGTACCCCCCGGGGGCGGATCGGTACCCCGGCGGCCTGGGCGCATATGGGGCTCACCCC
ACCGCCGCAGACCGCCGCCGGTGGTCAGGCGGGCCTCTTCGAGACATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.659 |
90.608 |
0.486 |
| ruvB | Streptococcus pneumoniae TIGR4 |
52 |
89.779 |
0.467 |
| ruvB | Streptococcus pneumoniae R6 |
52 |
89.779 |
0.467 |
| ruvB | Streptococcus pneumoniae D39 |
52 |
89.779 |
0.467 |
| ruvB | Synechocystis sp. PCC 6803 |
53.185 |
86.74 |
0.461 |
| ruvB | Helicobacter pylori 26695 |
49.096 |
91.713 |
0.45 |