Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | UXR45_RS08580 | Genome accession | NZ_CP150657 |
| Coordinates | 1679710..1680180 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934769.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain BSN214 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1670076..1713241 | 1679710..1680180 | within | 0 |
Gene organization within MGE regions
Location: 1670076..1713241
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UXR45_RS08500 (UXR45_08500) | - | 1670076..1671122 (-) | 1047 | WP_001145722.1 | tyrosine-type recombinase/integrase | - |
| UXR45_RS08505 (UXR45_08505) | - | 1671332..1672012 (-) | 681 | WP_000392109.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| UXR45_RS08510 (UXR45_08510) | - | 1672152..1672319 (-) | 168 | WP_000705238.1 | hypothetical protein | - |
| UXR45_RS08515 (UXR45_08515) | - | 1672389..1673108 (-) | 720 | WP_048519646.1 | XRE family transcriptional regulator | - |
| UXR45_RS08520 (UXR45_08520) | - | 1673250..1673468 (+) | 219 | WP_001198673.1 | helix-turn-helix transcriptional regulator | - |
| UXR45_RS08525 (UXR45_08525) | - | 1673484..1673654 (+) | 171 | WP_000398751.1 | hypothetical protein | - |
| UXR45_RS08530 (UXR45_08530) | - | 1673643..1673852 (-) | 210 | WP_000033736.1 | hypothetical protein | - |
| UXR45_RS08535 (UXR45_08535) | - | 1673909..1674658 (+) | 750 | WP_001148588.1 | phage antirepressor KilAC domain-containing protein | - |
| UXR45_RS08540 (UXR45_08540) | - | 1674674..1675123 (+) | 450 | WP_048519647.1 | hypothetical protein | - |
| UXR45_RS08545 (UXR45_08545) | - | 1675137..1675358 (+) | 222 | WP_000977377.1 | hypothetical protein | - |
| UXR45_RS08550 (UXR45_08550) | - | 1675351..1675512 (+) | 162 | WP_000048124.1 | DUF1270 family protein | - |
| UXR45_RS08555 (UXR45_08555) | - | 1675605..1675865 (+) | 261 | WP_000291489.1 | DUF1108 family protein | - |
| UXR45_RS08560 (UXR45_08560) | - | 1675874..1676137 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| UXR45_RS08565 (UXR45_08565) | - | 1676146..1678089 (+) | 1944 | WP_000700565.1 | AAA family ATPase | - |
| UXR45_RS08570 (UXR45_08570) | - | 1678091..1679011 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| UXR45_RS08575 (UXR45_08575) | - | 1679092..1679709 (+) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| UXR45_RS08580 (UXR45_08580) | ssbA | 1679710..1680180 (+) | 471 | WP_000934769.1 | single-stranded DNA-binding protein | Machinery gene |
| UXR45_RS08585 (UXR45_08585) | - | 1680210..1681094 (+) | 885 | WP_000148298.1 | DnaD domain protein | - |
| UXR45_RS08590 (UXR45_08590) | - | 1681101..1681319 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| UXR45_RS08595 (UXR45_08595) | - | 1681328..1681732 (+) | 405 | WP_000401964.1 | RusA family crossover junction endodeoxyribonuclease | - |
| UXR45_RS08600 (UXR45_08600) | - | 1681745..1682011 (+) | 267 | Protein_1678 | SA1788 family PVL leukocidin-associated protein | - |
| UXR45_RS08605 (UXR45_08605) | - | 1682020..1682262 (+) | 243 | WP_048519661.1 | SAV1978 family virulence-associated passenger protein | - |
| UXR45_RS08610 (UXR45_08610) | - | 1682277..1682525 (+) | 249 | WP_048519662.1 | DUF1024 family protein | - |
| UXR45_RS08615 (UXR45_08615) | - | 1682518..1683051 (+) | 534 | WP_048519663.1 | dUTP pyrophosphatase | - |
| UXR45_RS08620 (UXR45_08620) | - | 1683088..1683333 (+) | 246 | WP_031905177.1 | hypothetical protein | - |
| UXR45_RS08625 (UXR45_08625) | - | 1683502..1683651 (+) | 150 | WP_031926954.1 | DUF1381 domain-containing protein | - |
| UXR45_RS08630 (UXR45_08630) | - | 1683644..1684102 (+) | 459 | WP_048519664.1 | hypothetical protein | - |
| UXR45_RS08635 (UXR45_08635) | - | 1684115..1684288 (+) | 174 | WP_048519665.1 | transcriptional activator RinB | - |
| UXR45_RS08640 (UXR45_08640) | - | 1684289..1684435 (+) | 147 | WP_000989998.1 | hypothetical protein | - |
| UXR45_RS08645 (UXR45_08645) | - | 1684459..1684881 (+) | 423 | WP_000162699.1 | RinA family phage transcriptional activator | - |
| UXR45_RS08650 (UXR45_08650) | - | 1685068..1685508 (+) | 441 | WP_001003272.1 | terminase small subunit | - |
| UXR45_RS08655 (UXR45_08655) | - | 1685495..1686772 (+) | 1278 | WP_000169944.1 | PBSX family phage terminase large subunit | - |
| UXR45_RS08660 (UXR45_08660) | - | 1686783..1688318 (+) | 1536 | WP_048519666.1 | phage portal protein | - |
| UXR45_RS08665 (UXR45_08665) | - | 1688325..1689320 (+) | 996 | WP_048519667.1 | minor capsid protein | - |
| UXR45_RS08670 (UXR45_08670) | - | 1689393..1689563 (+) | 171 | WP_000072208.1 | hypothetical protein | - |
| UXR45_RS08675 (UXR45_08675) | - | 1689591..1689684 (+) | 94 | Protein_1693 | hypothetical protein | - |
| UXR45_RS08680 (UXR45_08680) | - | 1689672..1690292 (+) | 621 | WP_000392146.1 | DUF4355 domain-containing protein | - |
| UXR45_RS08685 (UXR45_08685) | - | 1690306..1691280 (+) | 975 | WP_048519668.1 | phage major capsid protein | - |
| UXR45_RS08690 (UXR45_08690) | - | 1691302..1691589 (+) | 288 | WP_001114085.1 | hypothetical protein | - |
| UXR45_RS08695 (UXR45_08695) | - | 1691598..1691930 (+) | 333 | WP_000208959.1 | phage head-tail connector protein | - |
| UXR45_RS08700 (UXR45_08700) | - | 1691927..1692229 (+) | 303 | WP_001268304.1 | hypothetical protein | - |
| UXR45_RS08705 (UXR45_08705) | - | 1692229..1692576 (+) | 348 | WP_001017811.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| UXR45_RS08710 (UXR45_08710) | - | 1692588..1692971 (+) | 384 | WP_048519669.1 | hypothetical protein | - |
| UXR45_RS08715 (UXR45_08715) | - | 1692990..1693571 (+) | 582 | WP_000002583.1 | phage major tail protein, TP901-1 family | - |
| UXR45_RS08720 (UXR45_08720) | - | 1693633..1693998 (+) | 366 | WP_001100163.1 | tail assembly chaperone | - |
| UXR45_RS08725 (UXR45_08725) | - | 1694028..1694372 (+) | 345 | WP_000105584.1 | hypothetical protein | - |
| UXR45_RS08730 (UXR45_08730) | - | 1694389..1697853 (+) | 3465 | WP_048519670.1 | membrane protein | - |
| UXR45_RS08735 (UXR45_08735) | - | 1697866..1698813 (+) | 948 | WP_001557971.1 | phage tail family protein | - |
| UXR45_RS08740 (UXR45_08740) | - | 1698822..1700723 (+) | 1902 | WP_000152714.1 | SGNH/GDSL hydrolase family protein | - |
| UXR45_RS08745 (UXR45_08745) | - | 1700738..1702648 (+) | 1911 | WP_048519671.1 | hypothetical protein | - |
| UXR45_RS08750 (UXR45_08750) | - | 1702648..1704471 (+) | 1824 | WP_000259600.1 | BppU family phage baseplate upper protein | - |
| UXR45_RS08755 (UXR45_08755) | - | 1704471..1704848 (+) | 378 | WP_000705888.1 | DUF2977 domain-containing protein | - |
| UXR45_RS08760 (UXR45_08760) | - | 1704858..1705031 (+) | 174 | WP_001800921.1 | XkdX family protein | - |
| UXR45_RS08765 (UXR45_08765) | - | 1705072..1705371 (+) | 300 | WP_000466784.1 | DUF2951 domain-containing protein | - |
| UXR45_RS08770 (UXR45_08770) | - | 1705508..1707412 (+) | 1905 | WP_048519672.1 | glucosaminidase domain-containing protein | - |
| UXR45_RS08775 (UXR45_08775) | - | 1707425..1708597 (+) | 1173 | WP_000276624.1 | BppU family phage baseplate upper protein | - |
| UXR45_RS08780 (UXR45_08780) | - | 1708603..1708998 (+) | 396 | WP_000398882.1 | hypothetical protein | - |
| UXR45_RS08785 (UXR45_08785) | - | 1709054..1709491 (+) | 438 | WP_000354135.1 | phage holin | - |
| UXR45_RS08790 (UXR45_08790) | - | 1709472..1710917 (+) | 1446 | WP_048519673.1 | SH3 domain-containing protein | - |
| UXR45_RS08795 (UXR45_08795) | - | 1711160..1711312 (+) | 153 | WP_001788502.1 | hypothetical protein | - |
| UXR45_RS08800 (UXR45_08800) | - | 1711383..1711493 (+) | 111 | WP_000139423.1 | hypothetical protein | - |
| UXR45_RS08805 (UXR45_08805) | - | 1711495..1711680 (+) | 186 | WP_001286805.1 | hypothetical protein | - |
| UXR45_RS08810 (UXR45_08810) | - | 1712006..1712107 (-) | 102 | WP_011447034.1 | hypothetical protein | - |
| UXR45_RS08815 (UXR45_08815) | - | 1712434..1712595 (+) | 162 | WP_001005407.1 | SE1561 family protein | - |
| UXR45_RS08820 (UXR45_08820) | - | 1712726..1713241 (+) | 516 | WP_000163283.1 | type 1 glutamine amidotransferase domain-containing protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17671.55 Da Isoelectric Point: 5.2672
>NTDB_id=971009 UXR45_RS08580 WP_000934769.1 1679710..1680180(+) (ssbA) [Staphylococcus aureus strain BSN214]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=971009 UXR45_RS08580 WP_000934769.1 1679710..1680180(+) (ssbA) [Staphylococcus aureus strain BSN214]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |