Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   ACLFAM_RS02505 Genome accession   NZ_CP178226
Coordinates   521394..522392 (-) Length   332 a.a.
NCBI ID   WP_039115741.1    Uniprot ID   -
Organism   Lactococcus lactis strain L-WY410     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 516394..527392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLFAM_RS02485 (ACLFAM_02485) trxA 516784..517098 (-) 315 WP_003129442.1 thioredoxin -
  ACLFAM_RS02490 (ACLFAM_02490) mutS/mutS2 517195..519525 (-) 2331 WP_017864836.1 endonuclease MutS2 Machinery gene
  ACLFAM_RS02495 (ACLFAM_02495) - 519570..520130 (-) 561 WP_003129445.1 CvpA family protein -
  ACLFAM_RS02500 (ACLFAM_02500) - 520290..521255 (-) 966 WP_023189681.1 NAD(P)/FAD-dependent oxidoreductase -
  ACLFAM_RS02505 (ACLFAM_02505) ccpA 521394..522392 (-) 999 WP_039115741.1 catabolite control protein A Regulator
  ACLFAM_RS02510 (ACLFAM_02510) - 522607..523695 (+) 1089 WP_003129448.1 M24 family metallopeptidase -
  ACLFAM_RS02515 (ACLFAM_02515) - 523979..525979 (-) 2001 WP_023189683.1 cell division site-positioning protein MapZ family protein -
  ACLFAM_RS02520 (ACLFAM_02520) - 526127..527281 (-) 1155 WP_003129451.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 36606.66 Da        Isoelectric Point: 4.9196

>NTDB_id=970982 ACLFAM_RS02505 WP_039115741.1 521394..522392(-) (ccpA) [Lactococcus lactis strain L-WY410]
MVESTTTIYDVARVAGVSMATVSRVVNGNANVKEKTRQKVLEAIAELDYRPNAVARGLSSKRTTTVGVILPTITSTYFAA
ITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKNSRTPVVLVGTIDGDKEIPSV
NIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANTEFDENLVFEGNYSYEQGKALAERLLERGA
TSAVVSHDTVAVGLLSAMMDKGVKVPEDFEIISGANSPITQYTYPTLTSVNQPLYDLGAVAMRLLTKLMLKEDVEQNQLV
LDHEIFSRRSTK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=970982 ACLFAM_RS02505 WP_039115741.1 521394..522392(-) (ccpA) [Lactococcus lactis strain L-WY410]
ATGGTAGAATCAACAACAACAATTTATGATGTGGCACGTGTCGCCGGAGTGTCAATGGCAACCGTTAGTCGTGTTGTAAA
TGGAAATGCAAATGTAAAGGAAAAGACGCGCCAGAAGGTCTTAGAAGCTATTGCTGAGCTTGACTATCGTCCTAATGCAG
TTGCGCGCGGACTCTCAAGTAAACGTACAACAACAGTTGGTGTTATCTTGCCAACCATCACTTCAACTTACTTCGCAGCG
ATTACTCGCGGGGTTGATGATATCGCTTCCATGTATAAATACAACATGATTTTAGCTAATAGTGATAATGATGTTGAAAA
AGAAGAAAAAGTTTTAGAAACTTTCTTATCAAAACAAGTTGACGGAATCGTCTATATGGGTTCATCTTTAGATGAAAAAA
TTAGAACTTCCCTCAAAAATTCAAGAACACCTGTCGTTTTAGTTGGAACAATCGATGGAGATAAAGAAATTCCATCTGTT
AATATTGATTACCATTTGGCTGCTTATCAATCAACTAAAAAATTGATTGATAGTGGAAATAAAAAAATCGCTTATATCAT
GGGTTCATTGAAAGACGTTGAAAATACAGAACGTATGGTTGGTTATCAAGAAGCTTTGCTTGAAGCAAATACTGAATTTG
ATGAAAACCTCGTTTTTGAAGGTAATTATAGCTATGAACAAGGAAAAGCACTTGCTGAACGTTTACTTGAGCGAGGAGCA
ACTTCTGCAGTAGTATCACATGATACAGTAGCCGTTGGACTCTTGTCTGCAATGATGGATAAAGGAGTGAAAGTTCCTGA
AGATTTCGAAATTATCTCAGGTGCAAATTCACCAATTACTCAATATACATATCCAACTTTAACTTCTGTTAACCAACCCC
TTTACGATTTGGGAGCAGTAGCAATGCGTCTTTTGACAAAATTAATGCTTAAAGAAGATGTTGAACAAAATCAATTAGTT
TTGGATCATGAAATCTTTTCTCGTCGTTCTACCAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(7-52)

Periplasmic binding proteins and sugar binding domain of LacI family (Peripla_BP_1)

(64-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

99.398

100

0.994
  ccpA Streptococcus pneumoniae D39

56.798

99.699

0.566
  ccpA Streptococcus gordonii str. Challis substr. CH1

56.798

99.699

0.566

Multiple sequence alignment