Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   V8V52_RS01840 Genome accession   NZ_CP150648
Coordinates   337375..337896 (+) Length   173 a.a.
NCBI ID   WP_000981963.1    Uniprot ID   -
Organism   Bacillus mycoides strain 4BM1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 332375..342896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8V52_RS01810 (V8V52_01810) spo0J 332846..333697 (+) 852 WP_170935246.1 stage 0 sporulation protein Spo0J -
  V8V52_RS01815 (V8V52_01815) yyaC 333718..334314 (-) 597 WP_002089953.1 spore protease YyaC -
  V8V52_RS01820 (V8V52_01820) - 334575..335432 (+) 858 WP_002089952.1 mechanosensitive ion channel family protein -
  V8V52_RS01825 (V8V52_01825) - 335453..335650 (+) 198 WP_000436054.1 DUF951 domain-containing protein -
  V8V52_RS01830 (V8V52_01830) ychF 335766..336866 (+) 1101 WP_002130188.1 redox-regulated ATPase YchF -
  V8V52_RS01835 (V8V52_01835) rpsF 337058..337348 (+) 291 WP_001233782.1 30S ribosomal protein S6 -
  V8V52_RS01840 (V8V52_01840) ssbA 337375..337896 (+) 522 WP_000981963.1 single-stranded DNA-binding protein Machinery gene
  V8V52_RS01845 (V8V52_01845) rpsR 337941..338174 (+) 234 WP_000918874.1 30S ribosomal protein S18 -
  V8V52_RS01850 (V8V52_01850) - 338255..339190 (+) 936 WP_002130187.1 YybS family protein -
  V8V52_RS01855 (V8V52_01855) - 339269..341242 (+) 1974 WP_088033928.1 DHH family phosphoesterase -
  V8V52_RS01860 (V8V52_01860) rplI 341239..341685 (+) 447 WP_002130186.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18809.58 Da        Isoelectric Point: 4.9222

>NTDB_id=970904 V8V52_RS01840 WP_000981963.1 337375..337896(+) (ssbA) [Bacillus mycoides strain 4BM1]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=970904 V8V52_RS01840 WP_000981963.1 337375..337896(+) (ssbA) [Bacillus mycoides strain 4BM1]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTGGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGACGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAGAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCGAATGTT
GGTCAACCGATTGACATTTCGGACGACGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382

Multiple sequence alignment