Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   ACLII2_RS06965 Genome accession   NZ_CP178213
Coordinates   1354889..1355584 (+) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis subsp. subtilis strain BM107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1349889..1360584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLII2_RS06945 folC 1350820..1352112 (+) 1293 WP_003229640.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ACLII2_RS06950 comC 1352252..1352998 (+) 747 WP_010886586.1 prepilin peptidase Machinery gene
  ACLII2_RS06955 spoIIB 1353132..1354130 (+) 999 WP_004398782.1 stage II sporulation protein SpoIIB -
  ACLII2_RS06960 maf 1354283..1354852 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  ACLII2_RS06965 ysxA/radC 1354889..1355584 (+) 696 WP_003246034.1 RadC family protein Machinery gene
  ACLII2_RS06970 mreB 1355676..1356689 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ACLII2_RS06975 mreC 1356720..1357592 (+) 873 WP_009967915.1 rod shape-determining protein MreC -
  ACLII2_RS06980 mreD 1357589..1358107 (+) 519 WP_004398811.1 rod shape-determining protein MreD -
  ACLII2_RS06985 minC 1358160..1358840 (+) 681 WP_004398901.1 septum site-determining protein MinC -
  ACLII2_RS06990 minD 1358842..1359648 (+) 807 WP_004398624.1 septum site-determining protein MinD -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=970757 ACLII2_RS06965 WP_003246034.1 1354889..1355584(+) (ysxA/radC) [Bacillus subtilis subsp. subtilis strain BM107]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=970757 ACLII2_RS06965 WP_003246034.1 1354889..1355584(+) (ysxA/radC) [Bacillus subtilis subsp. subtilis strain BM107]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424

Multiple sequence alignment