Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WIF35_RS09365 Genome accession   NZ_CP150631
Coordinates   1905846..1906307 (-) Length   153 a.a.
NCBI ID   WP_412477960.1    Uniprot ID   -
Organism   Azonexus sp. IMCC34839     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1900846..1911307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WIF35_RS09345 - 1901334..1901822 (+) 489 WP_412477956.1 adenylyltransferase/cytidyltransferase family protein -
  WIF35_RS09350 - 1902648..1904540 (-) 1893 WP_412477957.1 potassium transporter Kup -
  WIF35_RS09355 - 1904564..1904926 (-) 363 WP_412477958.1 DUF1992 domain-containing protein -
  WIF35_RS09360 - 1904943..1905791 (-) 849 WP_412477959.1 HDOD domain-containing protein -
  WIF35_RS09365 ssb 1905846..1906307 (-) 462 WP_412477960.1 single-stranded DNA-binding protein Machinery gene
  WIF35_RS09370 - 1906327..1907523 (-) 1197 WP_412477961.1 MFS transporter -
  WIF35_RS09375 - 1907596..1907922 (-) 327 WP_412477962.1 AzlD domain-containing protein -
  WIF35_RS09380 - 1907919..1908623 (-) 705 WP_412477963.1 AzlC family ABC transporter permease -
  WIF35_RS09385 aspA 1908958..1910382 (+) 1425 WP_412477964.1 aspartate ammonia-lyase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 16861.78 Da        Isoelectric Point: 5.9574

>NTDB_id=970722 WIF35_RS09365 WP_412477960.1 1905846..1906307(-) (ssb) [Azonexus sp. IMCC34839]
MASVNKVILVGNLGADPETRYTASGDAVCNIRLATTDSWKDKNSGEKREMTEWHRVVFYRKLAEIAGQYLRKGSQVYLEG
RIKTRKWQDKDGQDRYTTEIEATEMQMLGGRQGAGAPAGGGGGGYDEPTDYSPAPPKNKPKPSFDDLGDDIPF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=970722 WIF35_RS09365 WP_412477960.1 1905846..1906307(-) (ssb) [Azonexus sp. IMCC34839]
ATGGCTTCAGTTAACAAGGTGATTCTCGTCGGCAACCTCGGCGCCGATCCGGAAACGCGCTACACCGCCAGCGGCGATGC
CGTGTGCAATATCCGTCTGGCCACCACCGATAGCTGGAAGGACAAGAACAGCGGCGAGAAGCGCGAAATGACCGAGTGGC
ACCGCGTCGTCTTCTACCGCAAGCTGGCCGAGATCGCCGGTCAATACCTGCGCAAGGGCTCCCAGGTCTATCTGGAAGGC
CGGATCAAGACCCGCAAGTGGCAGGACAAGGACGGCCAGGATCGCTACACGACCGAAATCGAAGCGACCGAAATGCAGAT
GCTGGGCGGTCGCCAAGGCGCCGGCGCGCCGGCCGGCGGCGGTGGCGGTGGCTACGACGAGCCGACCGACTACTCGCCGG
CTCCGCCGAAGAACAAGCCGAAGCCCTCCTTCGACGATCTGGGCGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.542

100

0.608
  ssb Glaesserella parasuis strain SC1401

51.111

100

0.601
  ssb Neisseria meningitidis MC58

49.425

100

0.562
  ssb Neisseria gonorrhoeae MS11

49.425

100

0.562

Multiple sequence alignment