Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | WHC13_RS13425 | Genome accession | NZ_CP150487 |
| Coordinates | 2557272..2557568 (-) | Length | 98 a.a. |
| NCBI ID | WP_003230162.1 | Uniprot ID | A0A809FGR8 |
| Organism | Bacillus subtilis strain JNF2 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2552272..2562568
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WHC13_RS13380 (WHC13_13380) | tasA | 2552680..2553465 (-) | 786 | WP_004398632.1 | biofilm matrix protein TasA | - |
| WHC13_RS13385 (WHC13_13385) | sipW | 2553529..2554101 (-) | 573 | WP_003246088.1 | signal peptidase I | - |
| WHC13_RS13390 (WHC13_13390) | tapA | 2554085..2554846 (-) | 762 | WP_004399106.1 | amyloid fiber anchoring/assembly protein TapA | - |
| WHC13_RS13395 (WHC13_13395) | yqzG | 2555118..2555444 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| WHC13_RS13400 (WHC13_13400) | spoIIT | 2555486..2555665 (-) | 180 | WP_003230176.1 | YqzE family protein | - |
| WHC13_RS13405 (WHC13_13405) | comGG | 2555736..2556110 (-) | 375 | WP_003230170.1 | ComG operon protein ComGG | Machinery gene |
| WHC13_RS13410 (WHC13_13410) | comGF | 2556111..2556494 (-) | 384 | WP_003230168.1 | ComG operon protein ComGF | Machinery gene |
| WHC13_RS13415 (WHC13_13415) | comGE | 2556520..2556867 (-) | 348 | WP_003230165.1 | ComG operon protein 5 | Machinery gene |
| WHC13_RS13420 (WHC13_13420) | comGD | 2556851..2557282 (-) | 432 | WP_004398628.1 | comG operon protein ComGD | Machinery gene |
| WHC13_RS13425 (WHC13_13425) | comGC | 2557272..2557568 (-) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
| WHC13_RS13430 (WHC13_13430) | comGB | 2557582..2558619 (-) | 1038 | WP_009967727.1 | comG operon protein ComGB | Machinery gene |
| WHC13_RS13435 (WHC13_13435) | comGA | 2558606..2559676 (-) | 1071 | WP_004399124.1 | competence protein ComGA | Machinery gene |
| WHC13_RS13440 (WHC13_13440) | corA | 2560088..2561041 (-) | 954 | WP_004399136.1 | magnesium transporter CorA | - |
| WHC13_RS13445 (WHC13_13445) | yqhB | 2561184..2562512 (+) | 1329 | WP_009967730.1 | hemolysin family protein | - |
Sequence
Protein
Download Length: 98 a.a. Molecular weight: 10849.74 Da Isoelectric Point: 6.7083
>NTDB_id=970596 WHC13_RS13425 WP_003230162.1 2557272..2557568(-) (comGC) [Bacillus subtilis strain JNF2]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH
Nucleotide
Download Length: 297 bp
>NTDB_id=970596 WHC13_RS13425 WP_003230162.1 2557272..2557568(-) (comGC) [Bacillus subtilis strain JNF2]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |
| comGC | Staphylococcus aureus MW2 |
41.304 |
93.878 |
0.388 |
| comGC | Staphylococcus aureus N315 |
41.304 |
93.878 |
0.388 |
| comYC | Streptococcus suis isolate S10 |
49.333 |
76.531 |
0.378 |