Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   WHC13_RS13410 Genome accession   NZ_CP150487
Coordinates   2556111..2556494 (-) Length   127 a.a.
NCBI ID   WP_003230168.1    Uniprot ID   -
Organism   Bacillus subtilis strain JNF2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2551111..2561494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHC13_RS13370 (WHC13_13370) sinI 2552045..2552218 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  WHC13_RS13375 (WHC13_13375) sinR 2552252..2552587 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  WHC13_RS13380 (WHC13_13380) tasA 2552680..2553465 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  WHC13_RS13385 (WHC13_13385) sipW 2553529..2554101 (-) 573 WP_003246088.1 signal peptidase I -
  WHC13_RS13390 (WHC13_13390) tapA 2554085..2554846 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  WHC13_RS13395 (WHC13_13395) yqzG 2555118..2555444 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  WHC13_RS13400 (WHC13_13400) spoIIT 2555486..2555665 (-) 180 WP_003230176.1 YqzE family protein -
  WHC13_RS13405 (WHC13_13405) comGG 2555736..2556110 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  WHC13_RS13410 (WHC13_13410) comGF 2556111..2556494 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  WHC13_RS13415 (WHC13_13415) comGE 2556520..2556867 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  WHC13_RS13420 (WHC13_13420) comGD 2556851..2557282 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  WHC13_RS13425 (WHC13_13425) comGC 2557272..2557568 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  WHC13_RS13430 (WHC13_13430) comGB 2557582..2558619 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  WHC13_RS13435 (WHC13_13435) comGA 2558606..2559676 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  WHC13_RS13440 (WHC13_13440) corA 2560088..2561041 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14281.37 Da        Isoelectric Point: 5.8929

>NTDB_id=970593 WHC13_RS13410 WP_003230168.1 2556111..2556494(-) (comGF) [Bacillus subtilis strain JNF2]
MLISGSLAAIIHLFLSRQQEHDGFTQQEWMISIEQMMNECKESQAVKTAEHGSVLICTNLSGQDIRFDIYHSMIRKRVDG
KGHVPILDHITAMKADIENGVVLLKIESEDQKVYQTAFPVYSYLGGG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=970593 WHC13_RS13410 WP_003230168.1 2556111..2556494(-) (comGF) [Bacillus subtilis strain JNF2]
TTGCTCATATCAGGATCGTTAGCTGCGATTATCCATCTGTTTTTGTCTCGACAGCAGGAACATGACGGTTTCACACAGCA
GGAATGGATGATTTCGATAGAACAGATGATGAATGAATGCAAGGAATCACAGGCAGTTAAGACAGCCGAGCATGGGAGCG
TGTTAATCTGCACCAATCTTTCCGGACAAGACATCCGTTTTGACATTTATCATTCAATGATAAGAAAAAGAGTGGATGGC
AAAGGGCATGTTCCGATTTTAGATCATATTACTGCCATGAAAGCTGATATTGAAAATGGTGTTGTTTTGCTGAAAATTGA
GAGTGAAGACCAAAAAGTGTATCAAACTGCTTTTCCAGTCTATTCGTATTTAGGAGGGGGGTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(16-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment