Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   WHC13_RS13375 Genome accession   NZ_CP150487
Coordinates   2552252..2552587 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain JNF2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2547252..2557587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHC13_RS13355 (WHC13_13355) gcvT 2547844..2548932 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  WHC13_RS13360 (WHC13_13360) yqhH 2549374..2551047 (+) 1674 WP_004398544.1 SNF2-related protein -
  WHC13_RS13365 (WHC13_13365) yqhG 2551068..2551862 (+) 795 WP_003230200.1 YqhG family protein -
  WHC13_RS13370 (WHC13_13370) sinI 2552045..2552218 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  WHC13_RS13375 (WHC13_13375) sinR 2552252..2552587 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  WHC13_RS13380 (WHC13_13380) tasA 2552680..2553465 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  WHC13_RS13385 (WHC13_13385) sipW 2553529..2554101 (-) 573 WP_003246088.1 signal peptidase I -
  WHC13_RS13390 (WHC13_13390) tapA 2554085..2554846 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  WHC13_RS13395 (WHC13_13395) yqzG 2555118..2555444 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  WHC13_RS13400 (WHC13_13400) spoIIT 2555486..2555665 (-) 180 WP_003230176.1 YqzE family protein -
  WHC13_RS13405 (WHC13_13405) comGG 2555736..2556110 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  WHC13_RS13410 (WHC13_13410) comGF 2556111..2556494 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  WHC13_RS13415 (WHC13_13415) comGE 2556520..2556867 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  WHC13_RS13420 (WHC13_13420) comGD 2556851..2557282 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  WHC13_RS13425 (WHC13_13425) comGC 2557272..2557568 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=970591 WHC13_RS13375 WP_003226345.1 2552252..2552587(+) (sinR) [Bacillus subtilis strain JNF2]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=970591 WHC13_RS13375 WP_003226345.1 2552252..2552587(+) (sinR) [Bacillus subtilis strain JNF2]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment