Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V1467_RS02245 Genome accession   NZ_CP150481
Coordinates   465021..465578 (+) Length   185 a.a.
NCBI ID   WP_416307175.1    Uniprot ID   -
Organism   Neptunicella sp. SCSIO 80796     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 460021..470578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1467_RS02230 - 460163..460558 (-) 396 WP_416307173.1 acyl-CoA thioesterase -
  V1467_RS02235 uvrA 460576..463410 (-) 2835 WP_416307174.1 excinuclease ABC subunit UvrA -
  V1467_RS02240 - 463659..465005 (+) 1347 WP_416308635.1 MFS transporter -
  V1467_RS02245 ssb 465021..465578 (+) 558 WP_416307175.1 single-stranded DNA-binding protein Machinery gene
  V1467_RS02250 upp 465697..466326 (+) 630 WP_416307176.1 uracil phosphoribosyltransferase -
  V1467_RS02255 pyrC 466471..467505 (-) 1035 WP_416307177.1 dihydroorotase -
  V1467_RS02260 - 467566..468354 (-) 789 WP_416307178.1 PEP-CTERM/exosortase system-associated acyltransferase -
  V1467_RS02265 - 468698..470167 (-) 1470 WP_416307179.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20660.70 Da        Isoelectric Point: 4.9658

>NTDB_id=970526 V1467_RS02245 WP_416307175.1 465021..465578(+) (ssb) [Neptunicella sp. SCSIO 80796]
MASRGINKVILVGNLGQDPEVRYTPNGKAVANLTLATSESWKDQSGQIQEKTEWHRVSMFGKLAEIAGEYLKKGSQVYIE
GKLQTRKWQDQQGQDRYTTEIVLDPFNGVMQMLGGGSGRSQSEGGGYQQNQQRQQPQQNPQAQYQQYPNQGGGQAQQSRP
QNPPAQQNTPPMAEPDFDFDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=970526 V1467_RS02245 WP_416307175.1 465021..465578(+) (ssb) [Neptunicella sp. SCSIO 80796]
ATGGCAAGTCGTGGAATTAATAAAGTCATTTTGGTAGGTAATCTCGGCCAGGATCCCGAGGTTCGATATACCCCAAATGG
CAAAGCGGTGGCTAACCTAACGCTGGCGACATCGGAAAGCTGGAAAGACCAAAGCGGCCAAATTCAGGAAAAGACCGAGT
GGCACCGCGTATCTATGTTTGGCAAGTTGGCCGAAATTGCCGGTGAATACCTGAAAAAAGGTAGCCAAGTTTATATTGAA
GGTAAATTACAAACTCGCAAATGGCAAGATCAGCAAGGTCAGGATCGTTACACTACCGAAATCGTGCTGGATCCTTTTAA
CGGCGTGATGCAAATGTTGGGTGGCGGTAGTGGCCGTAGTCAGTCTGAAGGCGGTGGTTATCAACAGAATCAGCAGCGTC
AGCAGCCACAACAGAACCCGCAAGCACAATATCAGCAGTACCCGAATCAGGGAGGGGGGCAAGCGCAGCAAAGTCGTCCA
CAAAATCCTCCGGCGCAGCAGAATACGCCGCCAATGGCTGAGCCTGATTTTGATTTTGACGATGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

60.753

100

0.611
  ssb Glaesserella parasuis strain SC1401

52.88

100

0.546
  ssb Neisseria meningitidis MC58

47.34

100

0.481
  ssb Neisseria gonorrhoeae MS11

47.34

100

0.481

Multiple sequence alignment