Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SOZ35_RS21280 Genome accession   NZ_CP150480
Coordinates   4196259..4196774 (-) Length   171 a.a.
NCBI ID   WP_003326057.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain TL401     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4191259..4201774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOZ35_RS21250 (SOZ35_21250) - 4191583..4192149 (-) 567 WP_340640069.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  SOZ35_RS21255 (SOZ35_21255) - 4192268..4193026 (-) 759 WP_003326063.1 exodeoxyribonuclease III -
  SOZ35_RS21260 (SOZ35_21260) - 4193223..4194143 (+) 921 WP_340640071.1 EamA family transporter -
  SOZ35_RS21265 (SOZ35_21265) - 4194277..4194903 (+) 627 WP_340640759.1 GntR family transcriptional regulator -
  SOZ35_RS21270 (SOZ35_21270) - 4195006..4195845 (-) 840 WP_340640072.1 MBL fold metallo-hydrolase -
  SOZ35_RS21275 (SOZ35_21275) rpsR 4195976..4196215 (-) 240 WP_003326058.1 30S ribosomal protein S18 -
  SOZ35_RS21280 (SOZ35_21280) ssbA 4196259..4196774 (-) 516 WP_003326057.1 single-stranded DNA-binding protein SsbA Machinery gene
  SOZ35_RS21285 (SOZ35_21285) rpsF 4196814..4197101 (-) 288 WP_003326056.1 30S ribosomal protein S6 -
  SOZ35_RS21290 (SOZ35_21290) ychF 4197214..4198314 (-) 1101 WP_003326055.1 redox-regulated ATPase YchF -
  SOZ35_RS21295 (SOZ35_21295) - 4198441..4200444 (-) 2004 WP_340640073.1 molybdopterin-dependent oxidoreductase -
  SOZ35_RS21300 (SOZ35_21300) - 4200494..4200700 (-) 207 WP_003326053.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18630.21 Da        Isoelectric Point: 4.7621

>NTDB_id=970525 SOZ35_RS21280 WP_003326057.1 4196259..4196774(-) (ssbA) [Bacillus atrophaeus strain TL401]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGGSGSGGYNEGNSGGQYFGGGQNDNPFGGNQNNQKRNQGNSFNDDPFANDGK
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=970525 SOZ35_RS21280 WP_003326057.1 4196259..4196774(-) (ssbA) [Bacillus atrophaeus strain TL401]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCTAACGGTGCGGCTGTTGC
CACGTTTACTCTTGCGGTGAATCGTACGTTTACGAATCAGTCAGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCCTTAAAAAAGGAAGCCTTGCAGGCGTGGATGGCCGTTTACAAACAAGA
AATTACGAAAACCAGCAAGGACAGCGCGTCTTCGTGACCGAAGTTCAGGCTGAAAGTGTTCAGTTTCTTGAGCCGAAAAG
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAATAGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATAATC
CATTTGGCGGAAATCAAAACAATCAGAAACGAAATCAAGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGCAAA
CCGATTGACATCTCAGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.256

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

57.955

100

0.596
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.988

0.398
  ssb Glaesserella parasuis strain SC1401

36.612

100

0.392

Multiple sequence alignment