Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | VUK78_RS12190 | Genome accession | NZ_CP150467 |
| Coordinates | 342785..343378 (+) | Length | 197 a.a. |
| NCBI ID | WP_005451500.1 | Uniprot ID | A0A9X3S2A2 |
| Organism | Vibrio harveyi strain NH-LM1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 337785..348378
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VUK78_RS12175 (VUK78_12175) | - | 338468..341038 (-) | 2571 | WP_050937527.1 | PBP1A family penicillin-binding protein | - |
| VUK78_RS12180 (VUK78_12180) | pilM | 341217..342233 (+) | 1017 | WP_026138410.1 | type IV pilus assembly protein PilM | Machinery gene |
| VUK78_RS12185 (VUK78_12185) | pilN | 342217..342792 (+) | 576 | WP_005451499.1 | PilN domain-containing protein | Machinery gene |
| VUK78_RS12190 (VUK78_12190) | pilO | 342785..343378 (+) | 594 | WP_005451500.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| VUK78_RS12195 (VUK78_12195) | pilP | 343368..343883 (+) | 516 | WP_005451501.1 | pilus assembly protein PilP | Machinery gene |
| VUK78_RS12200 (VUK78_12200) | pilQ | 343918..345675 (+) | 1758 | WP_195724146.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| VUK78_RS12205 (VUK78_12205) | aroK | 345865..346383 (+) | 519 | WP_005451507.1 | shikimate kinase AroK | - |
| VUK78_RS12210 (VUK78_12210) | aroB | 346415..347515 (+) | 1101 | WP_009697563.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23020.58 Da Isoelectric Point: 4.8068
>NTDB_id=970404 VUK78_RS12190 WP_005451500.1 342785..343378(+) (pilO) [Vibrio harveyi strain NH-LM1]
MVNWQDLEMDEIAEWPLVPQIVVILLLVVLIQGLGYWFYLKPEQEQLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGDKQSEHFLYRLPLDIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVKANTYQFKPEVKKDEK
MVNWQDLEMDEIAEWPLVPQIVVILLLVVLIQGLGYWFYLKPEQEQLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGDKQSEHFLYRLPLDIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVKANTYQFKPEVKKDEK
Nucleotide
Download Length: 594 bp
>NTDB_id=970404 VUK78_RS12190 WP_005451500.1 342785..343378(+) (pilO) [Vibrio harveyi strain NH-LM1]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATCGCTGAGTGGCCATTGGTGCCTCAGATAGTAGTGATCTTGTTGTT
AGTTGTGCTGATTCAAGGCCTTGGTTATTGGTTTTATTTAAAGCCAGAGCAAGAACAGCTGAATAACCTTATTCAAGAAG
AACAAACCTTAAAAGTTGCGTTACGGATCAAAGCGAACAAAGTCGCTGCTTTGCCTCAATTGCAATCGCAACTTGATGAG
CTTACTACTCGATACGAATTGCTACTGCAACAACTGCCTGCACAGAAAGAGCTGGCAACCATGTTGGCTTCGGTGAATGA
ACTCGGAATTGATAATAAGTTGACGTTCACCCGAATCGACTGGGGTGATAAGCAATCAGAACACTTCCTTTATCGTTTAC
CGCTCGACATTGAGTTGACAGGGGATTTTCATGATATCGGTCGTTTCTCCCAAGCGATTGCGACGTTGCCACGCATCATC
ACTTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTCTGCACTTTCGTGTGAAAGCAAACACTTACCA
GTTCAAACCAGAGGTGAAGAAAGATGAGAAGTAA
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATCGCTGAGTGGCCATTGGTGCCTCAGATAGTAGTGATCTTGTTGTT
AGTTGTGCTGATTCAAGGCCTTGGTTATTGGTTTTATTTAAAGCCAGAGCAAGAACAGCTGAATAACCTTATTCAAGAAG
AACAAACCTTAAAAGTTGCGTTACGGATCAAAGCGAACAAAGTCGCTGCTTTGCCTCAATTGCAATCGCAACTTGATGAG
CTTACTACTCGATACGAATTGCTACTGCAACAACTGCCTGCACAGAAAGAGCTGGCAACCATGTTGGCTTCGGTGAATGA
ACTCGGAATTGATAATAAGTTGACGTTCACCCGAATCGACTGGGGTGATAAGCAATCAGAACACTTCCTTTATCGTTTAC
CGCTCGACATTGAGTTGACAGGGGATTTTCATGATATCGGTCGTTTCTCCCAAGCGATTGCGACGTTGCCACGCATCATC
ACTTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTCTGCACTTTCGTGTGAAAGCAAACACTTACCA
GTTCAAACCAGAGGTGAAGAAAGATGAGAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
93.158 |
96.447 |
0.898 |
| pilO | Vibrio cholerae strain A1552 |
71.066 |
100 |
0.711 |