Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   ACLF6N_RS14630 Genome accession   NZ_CP177279
Coordinates   2679613..2680308 (-) Length   231 a.a.
NCBI ID   WP_412052445.1    Uniprot ID   -
Organism   Bacillus subtilis strain KFRI-P74     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2674613..2685308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLF6N_RS14605 (ACLF6N_14605) minD 2675549..2676355 (-) 807 WP_014480454.1 septum site-determining protein MinD -
  ACLF6N_RS14610 (ACLF6N_14610) minC 2676357..2677037 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  ACLF6N_RS14615 (ACLF6N_14615) mreD 2677090..2677608 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  ACLF6N_RS14620 (ACLF6N_14620) mreC 2677605..2678477 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  ACLF6N_RS14625 (ACLF6N_14625) mreB 2678508..2679521 (-) 1014 WP_326043373.1 cell shape-determining protein MreB -
  ACLF6N_RS14630 (ACLF6N_14630) ysxA/radC 2679613..2680308 (-) 696 WP_412052445.1 RadC family protein Machinery gene
  ACLF6N_RS14635 (ACLF6N_14635) maf 2680345..2680914 (-) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  ACLF6N_RS14640 (ACLF6N_14640) spoIIB 2681067..2682065 (-) 999 WP_412052446.1 stage II sporulation protein SpoIIB -
  ACLF6N_RS14645 (ACLF6N_14645) comC 2682199..2682945 (-) 747 WP_072592551.1 prepilin peptidase Machinery gene
  ACLF6N_RS14650 (ACLF6N_14650) folC 2683085..2684377 (-) 1293 WP_014480460.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26124.41 Da        Isoelectric Point: 7.9415

>NTDB_id=970308 ACLF6N_RS14630 WP_412052445.1 2679613..2680308(-) (ysxA/radC) [Bacillus subtilis strain KFRI-P74]
MVKHDLPLKLKDFPIKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIHSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=970308 ACLF6N_RS14630 WP_412052445.1 2679613..2680308(-) (ysxA/radC) [Bacillus subtilis strain KFRI-P74]
TTGGTCAAACACGATCTGCCATTAAAACTCAAAGATTTCCCAATCAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCGAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCACTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

98.701

100

0.987
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424