Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   ACJWMD_RS06150 Genome accession   NZ_CP177182
Coordinates   1330044..1330715 (+) Length   223 a.a.
NCBI ID   WP_004182732.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD6060     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1325044..1335715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMD_RS06120 - 1325334..1325603 (-) 270 WP_004182727.1 DUF3165 family protein -
  ACJWMD_RS06125 typA 1325623..1327473 (-) 1851 WP_002884130.1 translational GTPase TypA -
  ACJWMD_RS06130 - 1327618..1328586 (-) 969 WP_004182728.1 ROK family glucokinase -
  ACJWMD_RS06135 - 1328579..1328785 (-) 207 WP_004182729.1 YqgQ family protein -
  ACJWMD_RS06140 - 1328872..1329324 (-) 453 WP_004182730.1 Fur family transcriptional regulator -
  ACJWMD_RS06145 - 1329413..1329934 (-) 522 WP_004182731.1 Dps family protein -
  ACJWMD_RS06150 cclA/cilC 1330044..1330715 (+) 672 WP_004182732.1 prepilin peptidase Machinery gene
  ACJWMD_RS06155 - 1330733..1332091 (-) 1359 WP_004182733.1 serine hydrolase -
  ACJWMD_RS06160 sodA 1332189..1332794 (-) 606 WP_004182735.1 superoxide dismutase SodA -
  ACJWMD_RS06165 holA 1332890..1333924 (-) 1035 WP_004182736.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25811.24 Da        Isoelectric Point: 8.4714

>NTDB_id=969843 ACJWMD_RS06150 WP_004182732.1 1330044..1330715(+) (cclA/cilC) [Streptococcus salivarius strain MRD6060]
MLSIIYFFLGASLGSFIGLICDRFPEKSIIFPSSHCSHCKHQLRFFEMIPILSQLFLRSRCRSCQTSIPLRYLFMELFCG
VICLLYFYDFLSLEVTYFLYFSLCLSIFDLKHKSYPLLIWIVGTLPLLFMGNHYLTFTLGLILAIISYIKRLNIGEGDFL
YLASASLIFPLSKTLLIIEIACLLGLAYFLLRRNLKEYIAFVPFLFLGIVLLTFCSIVIEKSR

Nucleotide


Download         Length: 672 bp        

>NTDB_id=969843 ACJWMD_RS06150 WP_004182732.1 1330044..1330715(+) (cclA/cilC) [Streptococcus salivarius strain MRD6060]
ATGTTAAGTATTATTTATTTTTTTCTGGGAGCCTCTTTAGGTTCATTTATCGGACTGATTTGTGATCGTTTCCCTGAGAA
GTCGATTATTTTTCCTAGTAGTCACTGTAGTCATTGCAAGCATCAGTTGCGTTTTTTCGAGATGATCCCTATCCTCTCAC
AACTTTTCTTAAGATCTCGATGTCGATCATGTCAGACTTCTATACCTCTTCGTTACCTCTTTATGGAACTATTTTGTGGA
GTAATATGCCTGCTATATTTCTATGACTTTTTGAGTCTTGAAGTAACCTACTTTCTTTACTTCAGCCTTTGTTTATCAAT
TTTTGATTTGAAGCATAAATCCTATCCGCTTCTGATTTGGATAGTTGGAACACTCCCGCTCCTATTCATGGGAAACCACT
ATCTCACTTTTACCTTAGGACTCATATTAGCAATTATATCCTATATTAAACGTTTAAACATTGGAGAAGGCGATTTTCTC
TACTTAGCTAGTGCCTCACTTATTTTCCCACTTTCAAAAACACTACTAATTATTGAAATTGCCTGCCTATTAGGACTAGC
TTACTTCCTTCTACGAAGAAATCTCAAGGAATACATCGCATTTGTTCCATTTCTTTTTCTCGGGATAGTACTCCTTACTT
TTTGTTCAATTGTGATAGAAAAAAGCCGATAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus pneumoniae TIGR4

41.589

95.964

0.399
  cclA/cilC Streptococcus mitis SK321

40.183

98.206

0.395
  cclA/cilC Streptococcus mitis NCTC 12261

41.121

95.964

0.395
  cclA/cilC Streptococcus pneumoniae Rx1

40.654

95.964

0.39
  cclA/cilC Streptococcus pneumoniae D39

40.654

95.964

0.39
  cclA/cilC Streptococcus pneumoniae R6

40.654

95.964

0.39