Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ACJWMD_RS01815 Genome accession   NZ_CP177182
Coordinates   340011..340673 (+) Length   220 a.a.
NCBI ID   WP_002886639.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD6060     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335011..345673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMD_RS01790 - 335318..336028 (+) 711 WP_002883761.1 ABC transporter ATP-binding protein -
  ACJWMD_RS01795 - 336163..336822 (+) 660 WP_002886636.1 CBS and ACT domain-containing protein -
  ACJWMD_RS01800 cysK 337002..337928 (-) 927 WP_002883742.1 cysteine synthase A -
  ACJWMD_RS01805 - 338030..338656 (-) 627 WP_002886637.1 YigZ family protein -
  ACJWMD_RS01810 comFA/cflA 338711..340030 (+) 1320 WP_002886638.1 DEAD/DEAH box helicase Machinery gene
  ACJWMD_RS01815 comFC/cflB 340011..340673 (+) 663 WP_002886639.1 ComF family protein Machinery gene
  ACJWMD_RS01820 hpf 340752..341300 (+) 549 WP_002883786.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26109.34 Da        Isoelectric Point: 8.6021

>NTDB_id=969800 ACJWMD_RS01815 WP_002886639.1 340011..340673(+) (comFC/cflB) [Streptococcus salivarius strain MRD6060]
MKCLLCNDWIESVPKLRDLITFNQREEYSCVSCKNQFKKLSKERCQNCNKELHRDTCIDCKLWMKKGYIPKHLAIYRYEE
NMKDYFSRYKFMGDYCLRKTFQKDIKNNLKPFFKKGYTIVPVPLSEERLVERGFNQVEGLIEGIPYQDIFEKRDIEKQSS
KTREERLSQDNAFCLKKGIDVPDKIIIVDDIYTTGSTLYQMVQLLEGIGIKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=969800 ACJWMD_RS01815 WP_002886639.1 340011..340673(+) (comFC/cflB) [Streptococcus salivarius strain MRD6060]
ATGAAGTGTCTACTATGTAATGACTGGATTGAATCAGTGCCAAAATTAAGAGACCTGATTACGTTTAACCAGAGAGAAGA
GTACTCCTGCGTATCTTGTAAAAATCAGTTTAAAAAACTTTCAAAAGAAAGATGTCAAAATTGTAATAAGGAGTTACATA
GAGATACCTGTATTGATTGTAAACTTTGGATGAAAAAAGGCTATATTCCTAAGCACCTTGCCATTTATCGCTATGAAGAA
AACATGAAAGATTATTTTAGCCGCTATAAATTTATGGGAGACTATTGTCTTAGAAAAACATTTCAAAAAGATATAAAAAA
TAATTTAAAACCATTTTTTAAAAAAGGTTATACCATAGTGCCGGTCCCATTGTCGGAAGAACGCTTGGTAGAAAGAGGAT
TCAACCAAGTTGAGGGATTAATAGAGGGAATTCCCTATCAGGATATCTTTGAGAAAAGAGATATTGAGAAGCAATCATCG
AAAACACGCGAGGAGCGTCTAAGTCAAGATAATGCCTTCTGTCTCAAGAAAGGTATAGATGTACCAGATAAGATTATTAT
AGTGGATGATATCTATACAACAGGATCCACTTTATATCAGATGGTCCAACTATTAGAAGGTATAGGTATTAAAGAAGTTT
TGACCTTTTCACTAGCTAGATAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(176-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.495

100

0.459
  comFC/cflB Streptococcus mitis SK321

45.045

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae D39

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae R6

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae TIGR4

44.595

100

0.45