Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ACJWMC_RS01895 Genome accession   NZ_CP177181
Coordinates   365276..365938 (+) Length   220 a.a.
NCBI ID   WP_002890024.1    Uniprot ID   J7T664
Organism   Streptococcus salivarius strain MRD1919     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 360276..370938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMC_RS01870 - 360616..361326 (+) 711 WP_002890015.1 ABC transporter ATP-binding protein -
  ACJWMC_RS01875 - 361461..362120 (+) 660 WP_002890017.1 CBS and ACT domain-containing protein -
  ACJWMC_RS01880 cysK 362267..363193 (-) 927 WP_002890018.1 cysteine synthase A -
  ACJWMC_RS01885 - 363295..363921 (-) 627 WP_002890020.1 YigZ family protein -
  ACJWMC_RS01890 comFA/cflA 363976..365295 (+) 1320 WP_002890022.1 DEAD/DEAH box helicase Machinery gene
  ACJWMC_RS01895 comFC/cflB 365276..365938 (+) 663 WP_002890024.1 ComF family protein Machinery gene
  ACJWMC_RS01900 hpf 366016..366183 (+) 168 Protein_336 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26137.42 Da        Isoelectric Point: 8.5995

>NTDB_id=969682 ACJWMC_RS01895 WP_002890024.1 365276..365938(+) (comFC/cflB) [Streptococcus salivarius strain MRD1919]
MKCLLCNDWIESVPKLRDLIMFNQRKEYSCRSCKHQFKNLSKERCQNCNKELYGDTCIDCKLWMKKGYIPKHLAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQDIKNNLKPFLKKGYTIVPVPLSEERLAERGFNQVEGLIEGIPYRDIFEKRDIEKQSS
KTREERLSQDNAFCLKEGINLPDKIIIVDDIYTTGSTLYQMVQLLEGIGIKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=969682 ACJWMC_RS01895 WP_002890024.1 365276..365938(+) (comFC/cflB) [Streptococcus salivarius strain MRD1919]
ATGAAGTGTCTGCTATGTAATGATTGGATTGAATCAGTACCAAAATTAAGAGACCTCATTATGTTTAACCAAAGAAAAGA
GTACTCTTGCCGATCTTGTAAACATCAGTTTAAAAACCTCTCAAAAGAAAGATGTCAAAATTGTAATAAAGAGTTATATG
GAGATACTTGTATTGATTGTAAACTTTGGATGAAAAAAGGCTATATTCCTAAGCACCTTGCTATTTATCGATATGAAGAA
AATATGAAAGAGTATTTTAGTCGCTATAAATTTATGGGAGACTATTGTCTTAGAAAAATATTTCAACAAGATATTAAAAA
CAACTTAAAACCATTTTTGAAGAAAGGTTATACCATAGTGCCAGTCCCATTATCGGAAGAACGCTTGGCAGAAAGAGGAT
TCAACCAAGTTGAGGGATTGATAGAGGGAATTCCCTATCGGGATATCTTTGAGAAAAGAGATATTGAGAAGCAATCCTCA
AAAACACGCGAGGAGCGTCTAAGTCAAGATAATGCTTTCTGTCTCAAGGAAGGTATAAATCTACCAGATAAGATTATTAT
AGTGGATGATATCTATACAACGGGTTCCACTTTATATCAGATGGTTCAACTGTTAGAAGGTATAGGTATTAAAGAAGTTT
TGACCTTTTCACTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J7T664

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.045

100

0.455
  comFC/cflB Streptococcus pneumoniae TIGR4

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae D39

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae R6

44.595

100

0.45
  comFC/cflB Streptococcus mitis SK321

44.144

100

0.445