Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACJVC4_RS02315 Genome accession   NZ_CP177179
Coordinates   449990..450949 (+) Length   319 a.a.
NCBI ID   WP_037598055.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD-NRLLH     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 444990..455949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVC4_RS02305 - 445597..446337 (-) 741 WP_037597464.1 CPBP family intramembrane glutamic endopeptidase -
  ACJVC4_RS02310 - 446747..448684 (+) 1938 WP_002890130.1 GbpC/Spa domain-containing protein -
  ACJVC4_RS02315 coiA 449990..450949 (+) 960 WP_037598055.1 competence protein CoiA Machinery gene
  ACJVC4_RS02320 pepF 450960..452765 (+) 1806 WP_002890133.1 oligoendopeptidase F Regulator
  ACJVC4_RS02325 - 452982..454202 (+) 1221 WP_002890134.1 OFA family MFS transporter -
  ACJVC4_RS02330 - 454274..454981 (+) 708 WP_002890135.1 O-methyltransferase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 38203.05 Da        Isoelectric Point: 9.5784

>NTDB_id=969446 ACJVC4_RS02315 WP_037598055.1 449990..450949(+) (coiA) [Streptococcus salivarius strain MRD-NRLLH]
MLIAKNPEGKLVSALETELNREETYCCPGCQGRVLLRQGQVMCPHFAHKSLQDCQFFSENESAQHLSLKAALYKSLVNHG
EKVRIEKVLSEMGQIADLFVGDSLALEVQCSRLSQQRLRERTRAYQQAGYEVRWLLGEDLWLGRRLTDLQRDFFYFTAKI
GFHLWELDWKKEEIRLKYLIYEDIFGKVYYLTKTWPLTENLMTVLRYPYQAEKVETYQVTQRKKVSHVIQRELMGKNPRW
MRRQEEAYLKGMNLLCLSDQDFFPQVRFPESRQGFVQIRQSLEGFEKLFKKYYRKRHFSYRQTLYPPTFYAKIEKNRHN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=969446 ACJVC4_RS02315 WP_037598055.1 449990..450949(+) (coiA) [Streptococcus salivarius strain MRD-NRLLH]
GTGTTAATTGCAAAAAATCCGGAAGGGAAATTGGTTTCAGCACTTGAAACTGAGTTAAATCGCGAGGAAACTTATTGTTG
TCCAGGTTGTCAAGGTAGAGTCCTATTGAGGCAGGGGCAGGTAATGTGTCCGCATTTTGCTCATAAGTCTTTGCAAGATT
GTCAGTTCTTCTCGGAGAATGAATCGGCCCAACATTTATCCCTTAAGGCAGCCTTATATAAATCTTTGGTTAATCATGGT
GAAAAAGTACGTATTGAAAAGGTTTTGTCCGAGATGGGGCAAATTGCAGATTTATTTGTTGGCGATTCCCTGGCTCTGGA
AGTTCAGTGTTCTCGTTTATCTCAGCAACGTTTGAGAGAGAGGACACGCGCCTATCAGCAAGCAGGTTATGAAGTGCGTT
GGCTTTTGGGGGAAGACCTATGGTTGGGACGGCGTTTAACAGACTTACAGCGGGACTTTTTCTATTTTACGGCTAAGATA
GGATTTCATCTATGGGAGCTTGATTGGAAGAAAGAGGAAATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAA
AGTCTATTACTTAACTAAGACCTGGCCTTTAACCGAAAATCTGATGACAGTTCTACGTTATCCTTATCAAGCAGAAAAGG
TTGAGACCTATCAAGTGACTCAGCGAAAGAAAGTCTCACATGTAATTCAACGAGAATTAATGGGGAAAAATCCAAGGTGG
ATGAGAAGACAGGAGGAAGCCTATCTTAAGGGAATGAATTTATTATGCCTGTCTGATCAGGATTTTTTCCCACAAGTAAG
ATTTCCTGAATCTAGGCAGGGTTTTGTACAAATTAGACAGTCACTTGAAGGTTTTGAAAAGCTTTTTAAGAAATATTATC
GAAAAAGGCATTTTTCTTATCGACAAACTCTCTACCCTCCCACCTTTTATGCTAAAATAGAAAAGAATAGACACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(3-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

45.338

97.492

0.442
  coiA Streptococcus pneumoniae Rx1

45.338

97.492

0.442
  coiA Streptococcus pneumoniae D39

45.338

97.492

0.442
  coiA Streptococcus pneumoniae R6

45.338

97.492

0.442
  coiA Streptococcus mitis NCTC 12261

45.338

97.492

0.442
  coiA Lactococcus lactis subsp. cremoris KW2

36.667

100

0.379

Multiple sequence alignment