Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MHB62_RS18375 Genome accession   NZ_CP150278
Coordinates   3525476..3526165 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. FSL K6-0255     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3520476..3531165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB62_RS18340 (MHB62_18335) flgN 3520657..3521139 (-) 483 WP_032722609.1 flagellar protein FlgN -
  MHB62_RS18345 (MHB62_18340) flgM 3521155..3521421 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  MHB62_RS18350 (MHB62_18345) - 3521502..3521921 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  MHB62_RS18355 (MHB62_18350) comFC 3521994..3522716 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  MHB62_RS18360 (MHB62_18355) comFB 3522680..3522976 (-) 297 WP_015483764.1 late competence protein ComFB -
  MHB62_RS18365 (MHB62_18360) comFA 3523036..3524427 (-) 1392 WP_089172669.1 ATP-dependent helicase ComFA Machinery gene
  MHB62_RS18370 (MHB62_18365) - 3524533..3525378 (-) 846 WP_003244125.1 DegV family protein -
  MHB62_RS18375 (MHB62_18370) degU 3525476..3526165 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MHB62_RS18380 (MHB62_18375) degS 3526248..3527405 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  MHB62_RS18385 (MHB62_18380) - 3527622..3528275 (+) 654 WP_003227979.1 YigZ family protein -
  MHB62_RS18390 (MHB62_18385) tagV 3528275..3529450 (+) 1176 WP_015714802.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  MHB62_RS18395 (MHB62_18390) - 3529523..3530599 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=969291 MHB62_RS18375 WP_003219701.1 3525476..3526165(-) (degU) [Bacillus sp. FSL K6-0255]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=969291 MHB62_RS18375 WP_003219701.1 3525476..3526165(-) (degU) [Bacillus sp. FSL K6-0255]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment