Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MHB62_RS18355 Genome accession   NZ_CP150278
Coordinates   3521994..3522716 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0255     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3516994..3527716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB62_RS18320 (MHB62_18315) fliW 3517134..3517565 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  MHB62_RS18325 (MHB62_18320) - 3517586..3518161 (-) 576 WP_003243053.1 DUF6470 family protein -
  MHB62_RS18330 (MHB62_18325) flgL 3518208..3519104 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  MHB62_RS18335 (MHB62_18330) flgK 3519115..3520638 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  MHB62_RS18340 (MHB62_18335) flgN 3520657..3521139 (-) 483 WP_032722609.1 flagellar protein FlgN -
  MHB62_RS18345 (MHB62_18340) flgM 3521155..3521421 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  MHB62_RS18350 (MHB62_18345) - 3521502..3521921 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  MHB62_RS18355 (MHB62_18350) comFC 3521994..3522716 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  MHB62_RS18360 (MHB62_18355) comFB 3522680..3522976 (-) 297 WP_015483764.1 late competence protein ComFB -
  MHB62_RS18365 (MHB62_18360) comFA 3523036..3524427 (-) 1392 WP_089172669.1 ATP-dependent helicase ComFA Machinery gene
  MHB62_RS18370 (MHB62_18365) - 3524533..3525378 (-) 846 WP_003244125.1 DegV family protein -
  MHB62_RS18375 (MHB62_18370) degU 3525476..3526165 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MHB62_RS18380 (MHB62_18375) degS 3526248..3527405 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=969289 MHB62_RS18355 WP_014481051.1 3521994..3522716(-) (comFC) [Bacillus sp. FSL K6-0255]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=969289 MHB62_RS18355 WP_014481051.1 3521994..3522716(-) (comFC) [Bacillus sp. FSL K6-0255]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAGAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992

Multiple sequence alignment