Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   MHB62_RS18365 Genome accession   NZ_CP150278
Coordinates   3523036..3524427 (-) Length   463 a.a.
NCBI ID   WP_089172669.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0255     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3518036..3529427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB62_RS18330 (MHB62_18325) flgL 3518208..3519104 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  MHB62_RS18335 (MHB62_18330) flgK 3519115..3520638 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  MHB62_RS18340 (MHB62_18335) flgN 3520657..3521139 (-) 483 WP_032722609.1 flagellar protein FlgN -
  MHB62_RS18345 (MHB62_18340) flgM 3521155..3521421 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  MHB62_RS18350 (MHB62_18345) - 3521502..3521921 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  MHB62_RS18355 (MHB62_18350) comFC 3521994..3522716 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  MHB62_RS18360 (MHB62_18355) comFB 3522680..3522976 (-) 297 WP_015483764.1 late competence protein ComFB -
  MHB62_RS18365 (MHB62_18360) comFA 3523036..3524427 (-) 1392 WP_089172669.1 ATP-dependent helicase ComFA Machinery gene
  MHB62_RS18370 (MHB62_18365) - 3524533..3525378 (-) 846 WP_003244125.1 DegV family protein -
  MHB62_RS18375 (MHB62_18370) degU 3525476..3526165 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MHB62_RS18380 (MHB62_18375) degS 3526248..3527405 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  MHB62_RS18385 (MHB62_18380) - 3527622..3528275 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52587.68 Da        Isoelectric Point: 10.0153

>NTDB_id=969290 MHB62_RS18365 WP_089172669.1 3523036..3524427(-) (comFA) [Bacillus sp. FSL K6-0255]
MNVPVEKNGSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENESNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHIKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=969290 MHB62_RS18365 WP_089172669.1 3523036..3524427(-) (comFA) [Bacillus sp. FSL K6-0255]
GTGAATGTGCCAGTTGAAAAAAACGGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ATCAAACTGGAAGTCTATTAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATATAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATTTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(327-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

99.136

100

0.991

Multiple sequence alignment