Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   MHH79_RS16275 Genome accession   NZ_CP150275
Coordinates   3116193..3116837 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0993     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3111193..3121837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH79_RS16240 (MHH79_16240) - 3112386..3112817 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  MHH79_RS16245 (MHH79_16245) - 3112817..3113158 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  MHH79_RS16250 (MHH79_16250) - 3113151..3114632 (+) 1482 WP_100505760.1 Na+/H+ antiporter subunit D -
  MHH79_RS16255 (MHH79_16255) - 3114638..3115114 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  MHH79_RS16260 (MHH79_16260) - 3115114..3115398 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  MHH79_RS16265 (MHH79_16265) mnhG 3115382..3115756 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  MHH79_RS16270 (MHH79_16270) - 3115795..3116175 (-) 381 WP_015483631.1 hotdog fold thioesterase -
  MHH79_RS16275 (MHH79_16275) comA 3116193..3116837 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  MHH79_RS16280 (MHH79_16280) comP 3116918..3119227 (-) 2310 WP_340034721.1 two-component system sensor histidine kinase ComP Regulator
  MHH79_RS16285 (MHH79_16285) comX 3119242..3119409 (-) 168 WP_100505762.1 competence pheromone ComX Regulator
  MHH79_RS16290 (MHH79_16290) comQ 3119393..3120295 (-) 903 WP_100505763.1 polyprenyl synthetase family protein Regulator
  MHH79_RS16295 (MHH79_16295) degQ 3120480..3120620 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  MHH79_RS16300 (MHH79_16300) - 3120842..3120967 (+) 126 WP_154796978.1 hypothetical protein -
  MHH79_RS16305 (MHH79_16305) - 3121082..3121450 (+) 369 WP_015483634.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=969131 MHH79_RS16275 WP_003220716.1 3116193..3116837(-) (comA) [Bacillus sp. FSL K6-0993]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=969131 MHH79_RS16275 WP_003220716.1 3116193..3116837(-) (comA) [Bacillus sp. FSL K6-0993]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATCT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAAGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment