Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MHI44_RS02915 Genome accession   NZ_CP150268
Coordinates   550262..550597 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus sp. FSL K6-1366     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 545262..555597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI44_RS02895 (MHI44_02895) gcvT 545854..546942 (-) 1089 WP_339202833.1 glycine cleavage system aminomethyltransferase GcvT -
  MHI44_RS02900 (MHI44_02900) - 547384..549057 (+) 1674 WP_029726726.1 SNF2-related protein -
  MHI44_RS02905 (MHI44_02905) - 549078..549872 (+) 795 WP_003230200.1 YqhG family protein -
  MHI44_RS02910 (MHI44_02910) sinI 550055..550228 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  MHI44_RS02915 (MHI44_02915) sinR 550262..550597 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  MHI44_RS02920 (MHI44_02920) tasA 550690..551475 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  MHI44_RS02925 (MHI44_02925) - 551539..552111 (-) 573 WP_003230181.1 signal peptidase I -
  MHI44_RS02930 (MHI44_02930) tapA 552095..552856 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  MHI44_RS02935 (MHI44_02935) - 553128..553454 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  MHI44_RS02940 (MHI44_02940) - 553496..553675 (-) 180 WP_014480252.1 YqzE family protein -
  MHI44_RS02945 (MHI44_02945) comGG 553747..554121 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  MHI44_RS02950 (MHI44_02950) comGF 554122..554505 (-) 384 WP_029317913.1 ComG operon protein ComGF Machinery gene
  MHI44_RS02955 (MHI44_02955) comGE 554531..554878 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  MHI44_RS02960 (MHI44_02960) comGD 554862..555293 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  MHI44_RS02965 (MHI44_02965) comGC 555283..555579 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=968787 MHI44_RS02915 WP_003226345.1 550262..550597(+) (sinR) [Bacillus sp. FSL K6-1366]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=968787 MHI44_RS02915 WP_003226345.1 550262..550597(+) (sinR) [Bacillus sp. FSL K6-1366]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment