Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MKX80_RS22180 Genome accession   NZ_CP150260
Coordinates   4381159..4381671 (-) Length   170 a.a.
NCBI ID   WP_154996095.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0972     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4376159..4386671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX80_RS22150 (MKX80_22150) - 4376552..4376692 (-) 141 WP_244958243.1 hypothetical protein -
  MKX80_RS22155 (MKX80_22155) - 4376852..4377328 (+) 477 WP_154996087.1 spore coat protein -
  MKX80_RS22160 (MKX80_22160) - 4377372..4377791 (-) 420 WP_154996089.1 universal stress protein -
  MKX80_RS22165 (MKX80_22165) - 4377809..4379275 (-) 1467 WP_234112498.1 SulP family inorganic anion transporter -
  MKX80_RS22170 (MKX80_22170) - 4379492..4380793 (+) 1302 WP_154996093.1 MFS transporter -
  MKX80_RS22175 (MKX80_22175) rpsR 4380871..4381110 (-) 240 WP_003178022.1 30S ribosomal protein S18 -
  MKX80_RS22180 (MKX80_22180) ssbA 4381159..4381671 (-) 513 WP_154996095.1 single-stranded DNA-binding protein SsbA Machinery gene
  MKX80_RS22185 (MKX80_22185) rpsF 4381718..4382005 (-) 288 WP_020453642.1 30S ribosomal protein S6 -
  MKX80_RS22190 (MKX80_22190) ychF 4382119..4383219 (-) 1101 WP_268310616.1 redox-regulated ATPase YchF -
  MKX80_RS22195 (MKX80_22195) - 4383400..4383606 (-) 207 WP_154996123.1 DUF951 domain-containing protein -
  MKX80_RS22200 (MKX80_22200) - 4383694..4384707 (-) 1014 WP_154996099.1 GerAB/ArcD/ProY family transporter -
  MKX80_RS22205 (MKX80_22205) yyaC 4385011..4385628 (+) 618 WP_154996101.1 spore protease YyaC -
  MKX80_RS22210 (MKX80_22210) - 4385666..4386514 (-) 849 WP_003178034.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18400.04 Da        Isoelectric Point: 4.9367

>NTDB_id=968493 MKX80_RS22180 WP_154996095.1 4381159..4381671(-) (ssbA) [Bacillus sp. FSL K6-0972]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQQGQRVYVTEVQAESVQFLEPKGGGSGSGGYSGGQGGQHFGGGQNEPAPFGGNQNNQNRNQGNSFNDDPFANDGKP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=968493 MKX80_RS22180 WP_154996095.1 4381159..4381671(-) (ssbA) [Bacillus sp. FSL K6-0972]
ATGCTTAACCGAGTTGTTTTAGTCGGCAGACTGACAAAGGACCCAGAGCTTCGTTATACTCCTAGCGGTGCAGCTGTTGC
CACCTTTACGCTTGCTGTCAATCGTACGTTTACGAATCAGCAGGGTGAACGTGAAGCTGATTTCATCAACTGTGTTGTCT
GGAGAAGACAAGCCGAAAACGTTGCAAATTTCCTTAAAAAAGGAAGTCTTGCGGGTGTAGATGGACGTTTGCAAACGCGC
AGCTATGAAAATCAGCAGGGACAGCGTGTATACGTCACGGAAGTTCAAGCTGAAAGTGTTCAATTTCTGGAGCCTAAAGG
CGGCGGTTCTGGTTCCGGCGGTTACAGCGGAGGCCAGGGAGGCCAACACTTTGGCGGCGGACAGAATGAACCGGCTCCAT
TCGGCGGCAATCAAAACAATCAGAATCGCAATCAAGGCAACAGCTTCAATGACGATCCATTCGCAAACGATGGAAAGCCG
ATTGACATCTCTGATGACGACTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.884

100

0.859
  ssb Latilactobacillus sakei subsp. sakei 23K

58.96

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

35.87

100

0.388

Multiple sequence alignment