Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MKX80_RS19370 Genome accession   NZ_CP150260
Coordinates   3783649..3784383 (-) Length   244 a.a.
NCBI ID   WP_339227423.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0972     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3778649..3789383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX80_RS19335 (MKX80_19335) fliW 3778800..3779231 (-) 432 WP_234113268.1 flagellar assembly protein FliW -
  MKX80_RS19340 (MKX80_19340) - 3779253..3779819 (-) 567 WP_234112328.1 DUF6470 family protein -
  MKX80_RS19345 (MKX80_19345) flgL 3779869..3780780 (-) 912 WP_234112329.1 flagellar hook-associated protein FlgL -
  MKX80_RS19350 (MKX80_19350) flgK 3780791..3782314 (-) 1524 WP_176276612.1 flagellar hook-associated protein FlgK -
  MKX80_RS19355 (MKX80_19355) - 3782330..3782806 (-) 477 WP_106071063.1 flagellar protein FlgN -
  MKX80_RS19360 (MKX80_19360) flgM 3782825..3783091 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  MKX80_RS19365 (MKX80_19365) - 3783171..3783590 (-) 420 WP_154999584.1 TIGR03826 family flagellar region protein -
  MKX80_RS19370 (MKX80_19370) comFC 3783649..3784383 (-) 735 WP_339227423.1 double zinc ribbon domain-containing protein Machinery gene
  MKX80_RS19375 (MKX80_19375) - 3784340..3784624 (-) 285 WP_339227425.1 late competence development ComFB family protein -
  MKX80_RS19380 (MKX80_19380) comFA 3784679..3786073 (-) 1395 WP_234112331.1 DEAD/DEAH box helicase Machinery gene
  MKX80_RS19385 (MKX80_19385) - 3786197..3787039 (-) 843 WP_176276616.1 DegV family protein -
  MKX80_RS19390 (MKX80_19390) degU 3787159..3787848 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  MKX80_RS19395 (MKX80_19395) degS 3787930..3789087 (-) 1158 WP_003185733.1 histidine kinase Regulator

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27810.44 Da        Isoelectric Point: 9.7670

>NTDB_id=968483 MKX80_RS19370 WP_339227423.1 3783649..3784383(-) (comFC) [Bacillus sp. FSL K6-0972]
MTTCFAKAIEKGGNKLNCLICEAPLLDSLSWHAFFFLRSEEKICRACKENFIKIKGTVCPKCGRPQESKELCGDCAKWEA
DPLTRSLLRQNRSVYLYNTFMKEVLARFKFRGDAELVFAFAPSFINAFHQYCRRTPAVLVPIPLSEERKAERGFNQAERL
ASLLKRPVIHPLIRIENEKQSKKSRKERIKPKTVFRTEKGSVKNLDIILIDDLYTTGATLHHAADCLMTSGEAKSVSSYT
LIRS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=968483 MKX80_RS19370 WP_339227423.1 3783649..3784383(-) (comFC) [Bacillus sp. FSL K6-0972]
ATGACAACCTGCTTTGCGAAAGCAATCGAAAAGGGAGGGAATAAACTGAATTGTTTAATTTGTGAAGCGCCTCTTTTAGA
TTCTCTCTCATGGCATGCTTTTTTCTTTTTACGATCAGAAGAGAAAATATGCAGGGCATGTAAAGAGAATTTTATCAAGA
TTAAAGGAACCGTGTGCCCTAAGTGCGGACGGCCCCAGGAAAGCAAAGAGCTGTGCGGTGACTGCGCAAAATGGGAAGCT
GATCCGTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTCTATCTCTACAATACCTTCATGAAAGAAGTCCTTGCCCG
TTTTAAGTTCAGAGGTGATGCTGAACTGGTCTTCGCTTTTGCTCCTTCATTCATCAATGCTTTCCATCAATATTGTCGCC
GCACCCCTGCTGTTTTGGTTCCGATACCACTCAGTGAAGAACGTAAAGCGGAGCGGGGATTTAATCAGGCGGAGCGGCTT
GCTTCCTTATTAAAAAGACCCGTTATTCATCCTTTGATCAGAATCGAAAATGAAAAACAATCCAAAAAAAGCAGAAAAGA
GCGGATTAAGCCAAAAACCGTTTTTAGAACCGAAAAGGGATCAGTAAAGAATCTGGATATCATATTAATTGACGACTTGT
ATACGACAGGGGCGACCCTTCATCATGCCGCTGATTGTCTGATGACATCCGGAGAGGCAAAATCTGTATCATCATATACA
TTAATTAGAAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(17-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

53.586

97.131

0.52

Multiple sequence alignment