Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MKX80_RS19390 Genome accession   NZ_CP150260
Coordinates   3787159..3787848 (-) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus sp. FSL K6-0972     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3782159..3792848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX80_RS19355 (MKX80_19355) - 3782330..3782806 (-) 477 WP_106071063.1 flagellar protein FlgN -
  MKX80_RS19360 (MKX80_19360) flgM 3782825..3783091 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  MKX80_RS19365 (MKX80_19365) - 3783171..3783590 (-) 420 WP_154999584.1 TIGR03826 family flagellar region protein -
  MKX80_RS19370 (MKX80_19370) comFC 3783649..3784383 (-) 735 WP_339227423.1 double zinc ribbon domain-containing protein Machinery gene
  MKX80_RS19375 (MKX80_19375) - 3784340..3784624 (-) 285 WP_339227425.1 late competence development ComFB family protein -
  MKX80_RS19380 (MKX80_19380) comFA 3784679..3786073 (-) 1395 WP_234112331.1 DEAD/DEAH box helicase Machinery gene
  MKX80_RS19385 (MKX80_19385) - 3786197..3787039 (-) 843 WP_176276616.1 DegV family protein -
  MKX80_RS19390 (MKX80_19390) degU 3787159..3787848 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  MKX80_RS19395 (MKX80_19395) degS 3787930..3789087 (-) 1158 WP_003185733.1 histidine kinase Regulator
  MKX80_RS19400 (MKX80_19400) - 3789310..3789948 (+) 639 WP_268315770.1 YigZ family protein -
  MKX80_RS19405 (MKX80_19405) - 3789963..3791042 (+) 1080 WP_268342829.1 LCP family protein -
  MKX80_RS19410 (MKX80_19410) - 3791127..3791501 (-) 375 WP_182069983.1 hypothetical protein -
  MKX80_RS19415 (MKX80_19415) - 3791631..3792695 (-) 1065 WP_154999577.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=968485 MKX80_RS19390 WP_003185730.1 3787159..3787848(-) (degU) [Bacillus sp. FSL K6-0972]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=968485 MKX80_RS19390 WP_003185730.1 3787159..3787848(-) (degU) [Bacillus sp. FSL K6-0972]
GTGACTAAAGTAAATATTGTAATCATTGACGATCATCAGTTATTCCGTGAAGGTGTCAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCCGAAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTTGTCA
TCATGGATATTAATATGCCGAATGTGAACGGAGTAGAAGCGACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTT
ATTATTTTATCCATCCATGATGACGAAAACTATGTTACACATGCATTAAAAACAGGAGCCCGCGGCTATCTGCTGAAAGA
AATGGATGCCGATACGCTGATCGAAGCCGTGAAAGTTGTGGCTGAAGGCGGATCTTACCTGCATCCTAAGGTTACGCATA
ATCTTGTGAATGAATTCCGCCGCCTTGCAACAAGCGGTGTATCATCTCACGCTCAGCATGAAGTGTATCCGGAAATCCGG
AGACCTCTTCACATTCTTACAAGAAGGGAATGCGAGGTTCTCCAGATGCTGGCGGACGGAAAAAGCAACCGCGGAATCGG
CGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCACGTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAA
CGCAGGCTGTCGTTGTAGCCATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987

Multiple sequence alignment