Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   MKX80_RS19380 Genome accession   NZ_CP150260
Coordinates   3784679..3786073 (-) Length   464 a.a.
NCBI ID   WP_234112331.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0972     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3779679..3791073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX80_RS19345 (MKX80_19345) flgL 3779869..3780780 (-) 912 WP_234112329.1 flagellar hook-associated protein FlgL -
  MKX80_RS19350 (MKX80_19350) flgK 3780791..3782314 (-) 1524 WP_176276612.1 flagellar hook-associated protein FlgK -
  MKX80_RS19355 (MKX80_19355) - 3782330..3782806 (-) 477 WP_106071063.1 flagellar protein FlgN -
  MKX80_RS19360 (MKX80_19360) flgM 3782825..3783091 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  MKX80_RS19365 (MKX80_19365) - 3783171..3783590 (-) 420 WP_154999584.1 TIGR03826 family flagellar region protein -
  MKX80_RS19370 (MKX80_19370) comFC 3783649..3784383 (-) 735 WP_339227423.1 double zinc ribbon domain-containing protein Machinery gene
  MKX80_RS19375 (MKX80_19375) - 3784340..3784624 (-) 285 WP_339227425.1 late competence development ComFB family protein -
  MKX80_RS19380 (MKX80_19380) comFA 3784679..3786073 (-) 1395 WP_234112331.1 DEAD/DEAH box helicase Machinery gene
  MKX80_RS19385 (MKX80_19385) - 3786197..3787039 (-) 843 WP_176276616.1 DegV family protein -
  MKX80_RS19390 (MKX80_19390) degU 3787159..3787848 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  MKX80_RS19395 (MKX80_19395) degS 3787930..3789087 (-) 1158 WP_003185733.1 histidine kinase Regulator
  MKX80_RS19400 (MKX80_19400) - 3789310..3789948 (+) 639 WP_268315770.1 YigZ family protein -
  MKX80_RS19405 (MKX80_19405) - 3789963..3791042 (+) 1080 WP_268342829.1 LCP family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52793.40 Da        Isoelectric Point: 9.5466

>NTDB_id=968484 MKX80_RS19380 WP_234112331.1 3784679..3786073(-) (comFA) [Bacillus sp. FSL K6-0972]
MIHIEHPASYSRELRSCIEQRHLLKSELPFPESVVDWHIQEGLIKTEEGIKKTKRGFICLRCGQHERSCFARYPCYRCSK
CCVYCRSCVMMGRVSECTPLLTWHAHGRHEWAPVHKEWKGALSAGQEKAAKSIIDAIRRKEELLIWAVCGSGKTELLFQG
IEFALNNSLRVCIATPRTDVVLELAPRFRQAFPGAEIAALYGGSSDVGALSPLIISTTHQLLRYKEAFDVIIIDEVDAFP
YSIDNTLQYAVKKSAKRQSAHIYLTATPSADMKKRAESGKLHTVCIPARFHRSPLPEPILIWCGDWKGSLKRRKVPFRLK
KWLFKHQELQHPVFLFVPSIPVLKSVVSLLKKETFRAEGVYAEDPDRNEKVNQFRESKLEVLVTTTILERGVTVKKAQVG
VLGAESEVFTESALVQMAGRAGRHPEHTAGDVCFFHYGRTKWMNAARRHIQNMNKMSKKEMLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=968484 MKX80_RS19380 WP_234112331.1 3784679..3786073(-) (comFA) [Bacillus sp. FSL K6-0972]
GTGATTCATATCGAACATCCTGCATCCTATTCCCGTGAATTGCGGTCATGTATTGAGCAGCGCCACCTTCTGAAAAGTGA
ACTTCCTTTTCCGGAATCTGTCGTTGATTGGCATATCCAAGAAGGCTTGATAAAAACGGAGGAAGGCATTAAAAAAACGA
AGAGGGGCTTTATTTGCTTGAGGTGCGGCCAGCACGAACGCTCATGTTTTGCTCGATATCCTTGCTATAGGTGCAGTAAA
TGTTGCGTGTACTGCCGGTCCTGCGTCATGATGGGCAGGGTGAGCGAGTGTACGCCTCTGTTGACTTGGCACGCGCATGG
CAGACATGAATGGGCGCCTGTTCACAAAGAGTGGAAAGGCGCTCTTTCAGCAGGTCAGGAAAAAGCGGCCAAATCCATTA
TCGATGCTATACGAAGGAAAGAGGAGCTTTTAATCTGGGCGGTTTGCGGGTCGGGGAAAACAGAACTTCTCTTTCAAGGG
ATTGAATTCGCGCTGAACAACAGCTTGAGAGTATGTATCGCCACTCCGAGAACAGACGTCGTGCTCGAGCTTGCTCCGCG
GTTTCGCCAAGCCTTTCCAGGGGCGGAAATTGCCGCTTTATACGGAGGGAGCTCAGACGTTGGGGCCCTCTCGCCGCTTA
TCATTTCAACTACCCACCAGCTGCTCCGCTATAAAGAAGCATTTGACGTGATCATCATAGATGAAGTGGATGCTTTTCCG
TATTCTATTGATAACACGCTGCAATACGCTGTTAAAAAATCGGCAAAACGGCAAAGCGCACACATCTATTTGACCGCCAC
GCCTTCTGCGGATATGAAGAAAAGGGCTGAGAGCGGAAAGCTGCACACCGTCTGTATTCCCGCGAGATTCCATCGCAGCC
CGCTGCCTGAACCTATATTGATTTGGTGCGGAGATTGGAAAGGGAGTTTGAAACGAAGAAAAGTTCCTTTTCGCCTCAAA
AAATGGCTTTTTAAGCACCAGGAACTGCAGCATCCGGTTTTTTTATTTGTTCCCTCTATTCCTGTTCTTAAATCCGTGGT
CAGTCTGCTGAAAAAGGAAACATTTCGCGCTGAAGGAGTTTATGCCGAAGACCCTGACAGAAATGAAAAAGTGAACCAAT
TTAGAGAAAGTAAGCTTGAGGTGCTCGTGACAACAACGATTTTGGAAAGAGGAGTGACCGTCAAAAAAGCACAGGTTGGA
GTATTGGGGGCAGAGTCGGAGGTTTTTACTGAAAGCGCCCTCGTCCAAATGGCCGGAAGAGCCGGCAGGCATCCCGAGCA
CACAGCTGGGGACGTCTGTTTCTTTCATTACGGCAGGACAAAGTGGATGAATGCGGCACGGCGTCATATTCAAAATATGA
ATAAAATGTCTAAAAAGGAAATGTTGATTGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(322-424)

Type III restriction enzyme, res subunit (ResIII)

(122-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

56.769

98.707

0.56

Multiple sequence alignment