Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   MKX38_RS18075 Genome accession   NZ_CP150258
Coordinates   3490762..3492153 (-) Length   463 a.a.
NCBI ID   WP_339187936.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0025     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3485762..3497153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX38_RS18040 (MKX38_18040) flgL 3485933..3486829 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  MKX38_RS18045 (MKX38_18045) flgK 3486840..3488363 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  MKX38_RS18050 (MKX38_18050) flgN 3488382..3488864 (-) 483 WP_229762648.1 flagellar protein FlgN -
  MKX38_RS18055 (MKX38_18055) flgM 3488880..3489146 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  MKX38_RS18060 (MKX38_18060) - 3489227..3489646 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  MKX38_RS18065 (MKX38_18065) comFC 3489720..3490442 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  MKX38_RS18070 (MKX38_18070) comFB 3490406..3490702 (-) 297 WP_003227989.1 late competence protein ComFB -
  MKX38_RS18075 (MKX38_18075) comFA 3490762..3492153 (-) 1392 WP_339187936.1 ATP-dependent helicase ComFA Machinery gene
  MKX38_RS18080 (MKX38_18080) - 3492259..3493104 (-) 846 WP_003244125.1 DegV family protein -
  MKX38_RS18085 (MKX38_18085) degU 3493202..3493891 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MKX38_RS18090 (MKX38_18090) degS 3493974..3495131 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  MKX38_RS18095 (MKX38_18095) - 3495348..3496001 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52604.62 Da        Isoelectric Point: 9.8509

>NTDB_id=968336 MKX38_RS18075 WP_339187936.1 3490762..3492153(-) (comFA) [Bacillus sp. FSL M8-0025]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELVPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFKGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=968336 MKX38_RS18075 WP_339187936.1 3490762..3492153(-) (comFA) [Bacillus sp. FSL M8-0025]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGTTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCGCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAAAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGTCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

99.136

100

0.991

Multiple sequence alignment