Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MKX38_RS18065 Genome accession   NZ_CP150258
Coordinates   3489720..3490442 (-) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus sp. FSL M8-0025     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3484720..3495442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX38_RS18030 (MKX38_18030) fliW 3484859..3485290 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  MKX38_RS18035 (MKX38_18035) - 3485311..3485886 (-) 576 WP_003243053.1 DUF6470 family protein -
  MKX38_RS18040 (MKX38_18040) flgL 3485933..3486829 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  MKX38_RS18045 (MKX38_18045) flgK 3486840..3488363 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  MKX38_RS18050 (MKX38_18050) flgN 3488382..3488864 (-) 483 WP_229762648.1 flagellar protein FlgN -
  MKX38_RS18055 (MKX38_18055) flgM 3488880..3489146 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  MKX38_RS18060 (MKX38_18060) - 3489227..3489646 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  MKX38_RS18065 (MKX38_18065) comFC 3489720..3490442 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  MKX38_RS18070 (MKX38_18070) comFB 3490406..3490702 (-) 297 WP_003227989.1 late competence protein ComFB -
  MKX38_RS18075 (MKX38_18075) comFA 3490762..3492153 (-) 1392 WP_339187936.1 ATP-dependent helicase ComFA Machinery gene
  MKX38_RS18080 (MKX38_18080) - 3492259..3493104 (-) 846 WP_003244125.1 DegV family protein -
  MKX38_RS18085 (MKX38_18085) degU 3493202..3493891 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MKX38_RS18090 (MKX38_18090) degS 3493974..3495131 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=968335 MKX38_RS18065 WP_003227991.1 3489720..3490442(-) (comFC) [Bacillus sp. FSL M8-0025]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=968335 MKX38_RS18065 WP_003227991.1 3489720..3490442(-) (comFC) [Bacillus sp. FSL M8-0025]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment