Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MKX38_RS18085 Genome accession   NZ_CP150258
Coordinates   3493202..3493891 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. FSL M8-0025     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3488202..3498891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX38_RS18050 (MKX38_18050) flgN 3488382..3488864 (-) 483 WP_229762648.1 flagellar protein FlgN -
  MKX38_RS18055 (MKX38_18055) flgM 3488880..3489146 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  MKX38_RS18060 (MKX38_18060) - 3489227..3489646 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  MKX38_RS18065 (MKX38_18065) comFC 3489720..3490442 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  MKX38_RS18070 (MKX38_18070) comFB 3490406..3490702 (-) 297 WP_003227989.1 late competence protein ComFB -
  MKX38_RS18075 (MKX38_18075) comFA 3490762..3492153 (-) 1392 WP_339187936.1 ATP-dependent helicase ComFA Machinery gene
  MKX38_RS18080 (MKX38_18080) - 3492259..3493104 (-) 846 WP_003244125.1 DegV family protein -
  MKX38_RS18085 (MKX38_18085) degU 3493202..3493891 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MKX38_RS18090 (MKX38_18090) degS 3493974..3495131 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  MKX38_RS18095 (MKX38_18095) - 3495348..3496001 (+) 654 WP_003227979.1 YigZ family protein -
  MKX38_RS18100 (MKX38_18100) tagV 3496001..3497176 (+) 1176 WP_339187939.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  MKX38_RS18105 (MKX38_18105) - 3497249..3498325 (-) 1077 WP_339187943.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=968337 MKX38_RS18085 WP_003219701.1 3493202..3493891(-) (degU) [Bacillus sp. FSL M8-0025]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=968337 MKX38_RS18085 WP_003219701.1 3493202..3493891(-) (degU) [Bacillus sp. FSL M8-0025]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment